Query= MSMg01no535_c05.b1 MSMg01no535_c05.b1 CHROMAT_FILE:
MSMg01no535_c05.b1 PHD_FILE: MSMg01no535_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:52 2005
(468 letters)
>mm_chr14_69836959_69837826
Length = 868
Score = 777 bits (402), Expect = 0.0
Identities = 441/464 (95%), Gaps = 16/464 (3%)
Strand = Plus / Minus
Query: 5 ggaattcactaaatttatcccaaagaagaaacaaacaaacaaaaaaaccctcttaaccag 64
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ggaattcactaaatttagcaaaaagaagaaacaaacaaacaaaaaaaccctcttaaccag 417
Query: 65 catgtgttagaactgactctaagccacacactaccctaaatgccttgcctgtaacccatc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 catgtgttagaactgactctaagccacacactaccctaaatgccttgcctgtaacccatc 357
Query: 125 ctgtgaagactcctgaaggatgttgggccatgatcagatacaatcatgatatattcatga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ctgtgaagactcctgaaggatgttgggccatgatcagatacaatcatgatatattcatga 297
Query: 185 ctaacacatagacatagactggtgttacctactaggcttgtagcctaaccagactccagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 296 ctaacacatagacatagactggtgttacctactaggcttgtagcctaaccagacttcagt 237
Query: 245 tttgaaagctatgcctaagtctagactaacaactcagacagtaaagtgctggccttgcaa 304
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 236 ttcgaaagctatgcctaagtctggactaacaactcagacagtaaagtgctggccttgcaa 177
Query: 305 gcttgaggacccgagctccatctcccagacatctgtctgtccatctgtccatccatccat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 gcttgaggacccgagctccatctcccagacatctgtctgtccatctgtccatccatccat 117
Query: 365 ccatccatccatccatccatccatccatccatccatccatccatccatccatccatccat 424
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 ccatccatccatccatccatccatccatccatccatccatccatcca------------- 70
Query: 425 ccacccatccatctatctgcatagaagcaggcatatatatgagt 468
|||||||||||||||||||||||||||||| ||||||||||
Sbjct: 69 ---cccatccatctatctgcatagaagcaggcagatatatgagt 29
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_c05.g1 MSMg01no535_c05.g1 CHROMAT_FILE:
MSMg01no535_c05.g1 PHD_FILE: MSMg01no535_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:52 2005
(611 letters)
>mm_chr14_69658568_69659578
Length = 1011
Score = 1064 bits (550), Expect = 0.0
Identities = 590/612 (96%), Gaps = 19/612 (3%)
Strand = Plus / Plus
Query: 1 ctagtacaattctcctaagttcagtaaactttctttctctcttttctcttttttttttta 60
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 203 ctagtacaattctcttaagttcagtaaactttctttctctcttttctc--ttttttttta 260
Query: 61 ttttttttatttttgctgtgaccttttcaatctgtgatataccctcctttctccccacag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttttttatttttgctgtgaccttttcaatctgtgatataccctcctttctccccacag 320
Query: 121 tgacattggtatatgtaccaacaatgcacatatctacacatatgaaaagaagcagttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacattggtatatgtaccaacaatgcacatatctacacatatgaaaagaagcagttctc 380
Query: 181 acaacgttgctgggtttttgttttgttttgtttttttggtttttggtttttgttttttgg 240
||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 381 acaacgttgctgggtttttgttttgttttgt--------tttttggtttttgtttttt-g 431
Query: 241 tttttggtttttgcttcttttttccccctccccctgcccctctccacctccttcttgaac 300
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 t------tttttgcttcttttttccccctccccctgcccctctccacctccttcttgaac 485
Query: 301 ttccaaagctttgtctcgtgttcgctgcagagcgattcgggggctgacctagacctgttt 360
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 486 ttccaaagctttgtctcgtgtttgctgcagagcgattcggggactgacctagacctgttt 545
Query: 361 gcatgatctcctctcttgtgatttggttgcactttagaacatttttgtgccgtattattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gcatgatctcctctcttgtgatttggttgcactttagaacatttttgtgccgtattattt 605
Query: 421 gcattatgtatttataatttaaatgatatttaggtttttggctgagtactggaataaaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gcattatgtatttataatttaaatgatatttaggtttttggctgagtactggaataaaca 665
Query: 481 gtgagcatatctggtatatgtcattatttattgttaaattacatttttaagctccatgtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gtgagcatatctggtatatgtcattatttattgttaaattacatttttaagctccatgtg 725
Query: 541 catataaaagttatgaaacatatcatggtaatgacagatgcaagttattttatttgcttt 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 catataaaagttatgaaacatatcatggtaatgacagatgcaagttattttatttgctt- 784
Query: 601 atttt-ataatt 611
||||| ||||||
Sbjct: 785 atttttataatt 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
