BAC Information

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BAC

Clone NameMSMg01-535G18
Chromosome14 (Build37)
Map Location 22,446,719 - 22,447,418
singlet/doubletsinglet
Overlap geneMyst4
Upstream geneMyoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1, Adk
Downstream geneEG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, 1700112E06Rik, EG665075, EG435392
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535G18.T7 (MSMg01no535_g18.b1)MSMg01-535G18.TJ (MSMg01no535_g18.g1)
ACCAG602875AG602876
length753772
length of high quality
(start - end)
704 (50 - 753)253 (81 - 333)
definitionCHROMAT_FILE: MSMg01no535_g18.b1 PHD_FILE: MSMg01no535_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:14 2005CHROMAT_FILE: MSMg01no535_g18.g1 PHD_FILE: MSMg01no535_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATTCCTGTAAACTGTCCTCTGACCTCCACGCCTGTACCAAG
GCACTGGTAATGCAGGCCCCATCTCCCCTGACAAAGAGATTAATGCAATT
TTTAAAAATAAGCTTTGTTATGTTATAAAGGGCTTTAGGGTTGCATTATC
ATCCAGATAGTGACTATTGTCCCTTACTTTTCTATATGAATATCCTCACT
CCATACACAAAGAAAAATGTTAAAGAGAGAAATCTGACATTTGCTATAGC
TGCAGGAGAACAAACACAAAGTGTCTGTCAAGGGCAGAATAAGGAATGAC
AATCCATAATCCATACTATTTCTTCAGATCAATGGTACCACAAGTCTTCA
GCATGACTGGGTGCTGCTAAAAACAAAGCTAGAAACCCAGGCAGACAGGG
TGACTGAAAGGGACGGAGGGGGACCGCTGGCCACACACCACTTACTGTCT
ACTGATGGTAAGACAGTGTGATTACTGTATGCCTTTGAGACGCCTATAGC
CTTACTTCTTCACGTCTGCTGAGAGTAACCCAAGTGGACCTGACATGGTA
AGCGGAACCATTTAGAGAAATTACTAGACAGTAAAAATGAAGATGACTTC
AATTGATTATAAAAGACAACAGTGCACTCATCAATGCCAGAAAGCTAAAA
ATGGACACATTTTCATATGGCAAGCCATCTGCGTCAGGACCACTGGTAAA
CTG
NNTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATAGCTGGATTGGCAAGTA
ACAGGAAGAGACACTAGGGCTGACTTGAGCTTCTTTTCTTTCTTTCTTCC
TTCCTTCCTTCCTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTCCTCCTCCTCCTCCTCCACCACCACCACCACGACCTCC
TCCTCCTCCTCTTTCTTCTTCTTCTTCTTCTGGTTTTTGAGACAGGGTTT
CTCTGTGTAGCCCTGGGTGACCTGGAATTAAATCTGGAGACCAGGGTGGA
CTCAAAAAAAGAAATCCGTCTGGCTGTGTGTCCCAAGTGAGGGGATTGAA
GGGGTGTGCCATCTATGTGCAGAGGGGTTGAGCTGTTGAAATATTGAAGC
GTATTGTGAAGAGAAATACGGGTTCGAAGGATGGGAGGGGGGTAATAATG
GGAAGCAATAAATAAGTGAAAGGAGGGTTTTAGGGGGATATAAACTATTC
CACGCGAAAAGAAAGGGAAACTAGGAATAGCAGAGAATTGTGAAAACATC
GAAGGATTGGCGATAGGAAAATGATGATGTAGAAGGGTGTTGTGAGTGTG
ATCTTGATTCATAAAAGGTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_g18.b1 MSMg01no535_g18.b1 CHROMAT_FILE:
MSMg01no535_g18.b1 PHD_FILE: MSMg01no535_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:14 2005
         (704 letters)



>mm_chr14_22446464_22447567
          Length = 1104

 Score = 1330 bits (688), Expect = 0.0
 Identities = 697/700 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattcctgtaaactgtcctctgacctccacgcctgtaccaaggcactggtaatgc 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 955 gaattcattcctgtaaactgtcctctgacctccatgcctgtaccaaggcactggtaatgc 896

                                                                       
Query: 65  aggccccatctcccctgacaaagagattaatgcaatttttaaaaataagctttgttatgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 aggccccatctcccctgacaaagagattaatgcaatttttaaaaataagctttgttatgt 836

                                                                       
Query: 125 tataaagggctttagggttgcattatcatccagatagtgactattgtcccttacttttct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 tataaagggctttagggttgcattatcatccagatagtgactattgtcccttacttttct 776

                                                                       
Query: 185 atatgaatatcctcactccatacacaaagaaaaatgttaaagagagaaatctgacatttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 atatgaatatcctcactccatacacaaagaaaaatgttaaagagagaaatctgacatttg 716

                                                                       
Query: 245 ctatagctgcaggagaacaaacacaaagtgtctgtcaagggcagaataaggaatgacaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ctatagctgcaggagaacaaacacaaagtgtctgtcaagggcagaataaggaatgacaat 656

                                                                       
Query: 305 ccataatccatactatttcttcagatcaatggtaccacaagtcttcagcatgactgggtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ccataatccatactatttcttcagatcaatggtaccacaagtcttcagcatgactgggtg 596

                                                                       
Query: 365 ctgctaaaaacaaagctagaaacccaggcagacagggtgactgaaagggacggaggggga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ctgctaaaaacaaagctagaaacccaggcagacagggtgactgaaagggacggaggggga 536

                                                                       
Query: 425 ccgctggccacacaccacttactgtctactgatggtaagacagtgtgattactgtatgcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ccgctggccacacaccacttactgtctactgatggtaagacagtgtgattactgtatgcc 476

                                                                       
Query: 485 tttgagacgcctatagccttacttcttcacgtctgctgagagtaacccaagtggacctga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tttgagacgcctatagccttacttcttcacgtctgctgagagtaacccaagtggacctga 416

                                                                       
Query: 545 catggtaagcggaaccatttagagaaattactagacagtaaaaatgaagatgacttcaat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 catggtaagcggaaccatttagagaaattactagacagtaaaaatgaagatgacttcaat 356

                                                                       
Query: 605 tgattataaaagacaacagtgcactcatcaatgccagaaagctaaaaatggacacatttt 664
           |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 355 tgattataaaagacgacagtgcgctcatcaatgccagaaagctaaaaatggacacatttt 296

                                                   
Query: 665 catatggcaagccatctgcgtcaggaccactggtaaactg 704
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 catatggcaagccatctgcgtcaggaccactggtaaactg 256


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space:   759236
Effective search space used:   759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)