Query= MSMg01no535_p18.b1 MSMg01no535_p18.b1 CHROMAT_FILE:
MSMg01no535_p18.b1 PHD_FILE: MSMg01no535_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:57 2005
(648 letters)
>mm_chr14_25990189_25991236
Length = 1048
Score = 1199 bits (620), Expect = 0.0
Identities = 639/646 (98%), Gaps = 2/646 (0%)
Strand = Plus / Plus
Query: 5 gaattcagtgtggtttaggactgtgatgcaaagcaggaacaatggggactgaggtggctg 64
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 205 gaattcagcgtggtttaggagtgtgatgcaaagcaggaacaatggggactgaggaggctg 264
Query: 65 gaattccggaccctgagtctctcaagattctctcctgagcaccaggtagttagcctccca 124
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaattctggaccctgagtctctcaagattctctcctgagcaccaggtagttagcctccca 324
Query: 125 gagagcatcttccctatcactgacccactgcctccacacactgtctcttccaacctttgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagagcatcttccctatcactgacccactgcctccacacactgtctcttccaacctttgc 384
Query: 185 aatgacaatgtcttgtcacccacctcttagctccccgaccggcctctcctgacctcaacc 244
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 aatgacaatgtcttgtcacccacctcttagctccccgaccagcctctcctgacctcaacc 444
Query: 245 tgtccacctctacccacctaggcccgactccttgaggccttcactgccatcatccctacc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtccacctctacccacctaggcccgactccttgaggccttcactgccatcatccctacc 504
Query: 305 tacatccattgttgctcttttctattcccctccctccttctgcggtagaactcaaataca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tacatccattgttgctcttttctattcccctccctccttctgcggtagaactcaaataca 564
Query: 365 acccaatctcacctgttatttcctggacacctacaacaccatccagtgtctgcaaagatc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acccaatctcacctgttatttcctggacacctacaacaccatccagtgtctgcaaagatc 624
Query: 425 acctcaagactacaaataggtgctggagttccaactattaaattgcacatatcagaaaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acctcaagactacaaataggtgctggagttccaactattaaattgcacatatcagaaaat 684
Query: 485 ataaataaaagtaggatttgtgatagcacttgttaaaagagacacacaaacatagacgca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ataaataaaagtaggatttgtgatagcacttgttaaaagagacacacaaacatagacgca 744
Query: 545 cacacacacacac--tgatgaaactgaaagcaacatcttcactggagttgtggcttctct 602
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cacacacacacacactgatgaaactgaaagcaacatcttcactggagttgtggcttctct 804
Query: 603 gaaggcaagtgtttactgggaaagagacgaataaaaggatattgca 648
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaaggcaagtgtttactgggaaagagacgaataaaaggatattgca 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no535_p18.g1 MSMg01no535_p18.g1 CHROMAT_FILE:
MSMg01no535_p18.g1 PHD_FILE: MSMg01no535_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:58 2005
(581 letters)
>mm_chr14_26153171_26154151
Length = 981
Score = 957 bits (495), Expect = 0.0
Identities = 512/525 (97%), Gaps = 12/525 (2%)
Strand = Plus / Minus
Query: 69 agtggcttcccagtgccccagcatatttctctcatcccaatagcctccactcaccctagc 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 agtggcttcccagtgccccagcatatttctctcatcccaatagcctccactcaccctagc 922
Query: 129 aattgccatggtgggccacctgtgaagtgtggcaggccctgtgctcaaggccagcaacct 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 aattgccatggtgggccacctgtgaagtgtggcaggccctgtgctcaaggccagcaacct 862
Query: 189 gggggacttttggtttattaaacacatggcagtggaaagagcatgcatcatggaaaggcc 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gggggacttttggtttattaaacacatggcagtggaaagagcatgcatcatggaaaggcc 802
Query: 249 tgggatac------------aaaaaaaaaaaaaaaaagatatggttcagtagtcaggagt 296
|||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgggatacaaaaaaaaaaaaaaaaaaaaaaaaaaaaagatatggttcagtagtcaggagt 742
Query: 297 agagaaatgctccacagggtgaccggtgccaagaaatgggctgggagccaaggcataggt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agagaaatgctccacagggtgaccggtgccaagaaatgggctgggagccaaggcataggt 682
Query: 357 gagatcaatggggatgggccagggaagaatccctggagactgtaaaggcctcagtagggg 416
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 gagatcaatggggatgggccagggaagaatccctggagactgtgaaggcctcagtagggg 622
Query: 417 aatttgacttgaacttgacaggggtcactgaagaattttcggaaagggaatgatactatt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatttgacttgaacttgacaggggtcactgaagaattttcggaaagggaatgatactatt 562
Query: 477 ttactgatttcttaggtcagtttccatggaggccaatagaagacattcaacttaatggaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttactgatttcttaggtcagtttccatggaggccaatagaagacattcaacttaatggaa 502
Query: 537 ggatgggggagacaggagaatctttgaatagccagaaggaaaatt 581
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatgggggagacaggagaatctttgaatagccagaaggaaaatt 457
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
