Query= MSMg01no537_c11.b1 MSMg01no537_c11.b1 CHROMAT_FILE:
MSMg01no537_c11.b1 PHD_FILE: MSMg01no537_c11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:27 2005
(593 letters)
>mm_chr14_34161489_34162480
Length = 992
Score = 930 bits (481), Expect = 0.0
Identities = 547/591 (92%), Gaps = 39/591 (6%)
Strand = Plus / Plus
Query: 8 gaattctaagtca----tttactgtgatgatctgaccttcagtgttgaggggacctctga 63
||||||||||||| || ||||||||||||||||||||||||||||||| |||||
Sbjct: 208 gaattctaagtcagggatt----gtgatgatctgaccttcagtgttgaggggac-tctga 262
Query: 64 ctgcatcctgggcaggcctgaggggaggaccacaacctgtttgactatccattgccagag 123
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 263 ctgcaccctgggcaggcctgagggcaggaccacaacctgtttgactatccattgccagag 322
Query: 124 ggcagctctcctctgggtctggctgatgaactgagcaggctgcaactctgtccagaaact 183
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 323 ggcagctctcctctgggtctggctgatgaactgaacaggctgcaactctgtccagaaact 382
Query: 184 aggagtgatgagatctccaggatgtgagtggaagaagcgggtggtgcgtgaacattgact 243
|||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 383 aggagtgatgagatctccaggatgtgagtggaagaa---------------acattgact 427
Query: 244 ccgg-agttgggctgagcaaggacagaggttagcggcagtggaagcggaggcagcgtgga 302
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 428 ccgggagttgggctgagcaaggacagaggttagcggcagtggaagcagaggcagcgtgga 487
Query: 303 gcaggctgagggattgtgagagtttggctctgtctagacacctctgggtctgagctacct 362
|||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 488 gcaggctgagggattgtgagagtttggctctg--------------ggtctgagctacct 533
Query: 363 gtgagtctgtataggcagctaagggaggaggagtcaggaaggctgggaaccacttctcct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gtgagtctgtataggcagctaagggaggaggagtcaggaaggctgggaaccacttctcct 593
Query: 423 cagcaccatcctctccacatctcagcctcaatgggagggagactcaagaagacagtctta 482
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 594 cagcaccatcctctccacatctccgcctcaatgggagggagactcaagaagacagtctta 653
Query: 483 tttccagttccagtgaatgtcaacctggcaagccagtgggcctgagcctgggcttctgac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tttccagttccagtgaatgtcaacctggcaagccagtgggcctgagcctgggcttctgac 713
Query: 543 acttggacccttgaacctggttctgattctgtctgccccttctagtgaggc 593
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 acttggacccttgaacctggttctgattctgtctgccccttctagtgaggc 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 992
Length adjustment: 10
Effective length of query: 583
Effective length of database: 982
Effective search space: 572506
Effective search space used: 572506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_c11.g1 MSMg01no537_c11.g1 CHROMAT_FILE:
MSMg01no537_c11.g1 PHD_FILE: MSMg01no537_c11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:27 2005
(617 letters)
>mm_chr14_34334606_34335622
Length = 1017
Score = 1123 bits (581), Expect = 0.0
Identities = 608/617 (98%)
Strand = Plus / Minus
Query: 1 actctcaacaactaaaactcagagcatccctaaagactaggaacatagataaatatacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 817 actctcaacaactaaaactcagagcatccctaaagactaggaacatagataaatacacat 758
Query: 61 aatgttttctaggacatcttcaatctgttaaaagtaaaacactgtatctgtctcctgtct 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 757 aatgttttctaggacatcttcaatctgttaaaagtaaaacactgtacctgtctcctgtct 698
Query: 121 cccacggtgcccttcctcaacccttctaccatggtcccctgctcctccagcagcagagaa 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 697 cccacggtgcccttcctcaacccttctaccatggtcccctgctcccccagcagcagagaa 638
Query: 181 caaagtgagattggaaccaagccatcctaactgtcccttgctgtcctgccacctccctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 637 caaagtgagattggaaccaagccatcctaactgtcccttgctgtcctgccacctccccgg 578
Query: 241 cactgaagaacaaaacacatgcagcacctggggatgcatccattactcattagatgctga 300
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 577 cactgaagaacaaagcacatgcagcacctggggatgcatccattactcattagacgctga 518
Query: 301 gtagaaaaaccacaggatgtaaccaatgtgattccaacattgtttctacataaaacatcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gtagaaaaaccacaggatgtaaccaatgtgattccaacattgtttctacataaaacatcc 458
Query: 361 caatcccaatgcctagcccagtggggacagttcaagcactcaggacgcctggaaaacagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 caatcccaatgcctagcccagtggggacagttcaagcactcaggacgcctggaaaacagt 398
Query: 421 gggctaaccttgaagaggttgttcagggattcacacactcccacagctgtggatctgcca 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gggctaaccttgaacaggttgttcagggattcacacactcccacagctgtggatctgcca 338
Query: 481 gactgagggtggtgttaaacagtgcccacactggactgctgccaagtctgctgccagtgg 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 337 gactgagggtggtgttaaacagtgcccacactgggctgctgccaagtctgctgccagtgg 278
Query: 541 gaggaaatgaattggcggagtacagcatccgtgaaccaagcctcaggcagccacctggga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 277 gaggaaatgaattggcggagtacagcatccgtgaaccaagcctcaggcagccacctgaga 218
Query: 601 ataatttcctctttttt 617
|||||||||||||||||
Sbjct: 217 ataatttcctctttttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
