BAC Information

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BAC

Clone NameMSMg01-537D19
Chromosome14 (Build37)
Map Location 97,730,852 - 97,890,342
singlet/doubletdoublet
Overlap genenone
Upstream geneKlhl1, LOC100043366, LOC668654
Downstream geneEG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537D19.T7 (MSMg01no537_d19.b1)MSMg01-537D19.TJ (MSMg01no537_d19.g1)
ACCAG604256AG604257
length746752
length of high quality
(start - end)		693 (50 - 742)673 (80 - 752)
definitionCHROMAT_FILE: MSMg01no537_d19.b1 PHD_FILE: MSMg01no537_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:33 2005CHROMAT_FILE: MSMg01no537_d19.g1 PHD_FILE: MSMg01no537_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,889,654 - 97,890,342)(97,730,852 - 97,731,524)
sequence
NNACCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTCCCACAATAACTTCAAGCCTCTTTTCCTTTTGCACAGTG
TGAATTTTAGATGTGCCAGCATGAGGCTCATTACTTTACATGCACAATGG
ATAAACACATAGGATAGTTAAAGTTTTTAATTTGAAAAATACGTTAACAT
TATATCACATAATTTATGGGAAATGTGCAATATATTTTATCGACTGCATG
TAGAACTTGGAAATATGATTTATATGAATTTAGATTTCAGCATGATGAAT
TGATTGTCACGTTGAGGATTATGGAATTAGCTGGAAGAGCAGATGATTAA
CCACCACAGCATTTTGGCTAGTGAAGTTTTGCCTTCTGATTCTTGCACGT
TAATAAATCATACCTCAGCATATGGGATTATTTTGGCAATGGAGCCACTT
ATCAATTTAATAATTTCAAAGCAGTGCAACACACGAGCTGCAAATGTTGC
ATAGATGAAAACCAGTTACTAAGAACAATTTGAGTACTATTCTTATGGTC
ACATTAATTACAGCTGAAACAAACCTTGAAGAGATAAGAAAACACAGCAC
AACTCATCCTCTATTTACTAGGGAGAGAGAAAAAAAAGAATCAATATGGC
CATTAATTGCACAAATAGCAATAAATACTTTGGCTGCTCTCCAGGAAGTG
TACCAACTGAGAGAATTTTTCGTACTGCTGGTCTCATCACACAGAT

NGGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATACACTTATAAGAGAGCAA
ATACTTCAACTATTTCTAACTTTGATAGATACTCTCAAGTCTTTAAATTT
CACATTATTGCTAGCCATTTTGTTTTTCTTTGATAAATAATCCTGTTTGA
ACATTAGTGATTATGCTTAAAGAAAGCCTGGAGTTCTTTTCCAAATATAA
ACATTTTAAAAATTATTATTTGCTTTCCTGAACTATTTGGTTATTCCCCA
CTTACTCCATGGGGAAACTTACAGAATGTCATGTTATAAAATTCCTAGTA
TAGAGTAACTCTACCAGTTTCAGTATTTTGATGAATATAAATCTTAAGTG
AAAAAAATTGCCAAAAATATTCAAATGTAATCACATATAAACCACTGTAA
TATAATGTAAGAGTACCTTGTATAAATAAGAAAACCCGGTCAAACAGACA
TGTCTAAAACATAACTATATTTAGAATTTTATATGACTTTATATTTAGTC
ATACTGGATCTTTGCAATTCAATCAAGTCTGAGCTGTAGGGTTATTTAGA
ATCTTTCTAAGTGGCAGATAATAGTCTTTTGCAACTTGGAATAAGAAGAG
TCTTTAAAATATTCTTTCAGATCACATCTTTATAATTTTATACTAAAATA
TCTGTCTATAAAATGATTCCCTTCAATAAAGCATAGACTCAAATATTTAT
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_d19.b1 MSMg01no537_d19.b1 CHROMAT_FILE:
MSMg01no537_d19.b1 PHD_FILE: MSMg01no537_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:33 2005
         (693 letters)



>mm_chr14_97889450_97890542
          Length = 1093

 Score = 1324 bits (685), Expect = 0.0
 Identities = 688/689 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcccacaataacttcaagcctcttttccttttgcacagtgtgaattttagatg 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 gaattcttcccacaagaacttcaagcctcttttccttttgcacagtgtgaattttagatg 834

                                                                       
Query: 65  tgccagcatgaggctcattactttacatgcacaatggataaacacataggatagttaaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 tgccagcatgaggctcattactttacatgcacaatggataaacacataggatagttaaag 774

                                                                       
Query: 125 tttttaatttgaaaaatacgttaacattatatcacataatttatgggaaatgtgcaatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tttttaatttgaaaaatacgttaacattatatcacataatttatgggaaatgtgcaatat 714

                                                                       
Query: 185 attttatcgactgcatgtagaacttggaaatatgatttatatgaatttagatttcagcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 attttatcgactgcatgtagaacttggaaatatgatttatatgaatttagatttcagcat 654

                                                                       
Query: 245 gatgaattgattgtcacgttgaggattatggaattagctggaagagcagatgattaacca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gatgaattgattgtcacgttgaggattatggaattagctggaagagcagatgattaacca 594

                                                                       
Query: 305 ccacagcattttggctagtgaagttttgccttctgattcttgcacgttaataaatcatac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 ccacagcattttggctagtgaagttttgccttctgattcttgcacgttaataaatcatac 534

                                                                       
Query: 365 ctcagcatatgggattattttggcaatggagccacttatcaatttaataatttcaaagca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 ctcagcatatgggattattttggcaatggagccacttatcaatttaataatttcaaagca 474

                                                                       
Query: 425 gtgcaacacacgagctgcaaatgttgcatagatgaaaaccagttactaagaacaatttga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gtgcaacacacgagctgcaaatgttgcatagatgaaaaccagttactaagaacaatttga 414

                                                                       
Query: 485 gtactattcttatggtcacattaattacagctgaaacaaaccttgaagagataagaaaac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gtactattcttatggtcacattaattacagctgaaacaaaccttgaagagataagaaaac 354

                                                                       
Query: 545 acagcacaactcatcctctatttactagggagagagaaaaaaaagaatcaatatggccat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 acagcacaactcatcctctatttactagggagagagaaaaaaaagaatcaatatggccat 294

                                                                       
Query: 605 taattgcacaaatagcaataaatactttggctgctctccaggaagtgtaccaactgagag 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 taattgcacaaatagcaataaatactttggctgctctccaggaagtgtaccaactgagag 234

                                        
Query: 665 aatttttcgtactgctggtctcatcacac 693
           |||||||||||||||||||||||||||||
Sbjct: 233 aatttttcgtactgctggtctcatcacac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no537_d19.g1 MSMg01no537_d19.g1 CHROMAT_FILE:
MSMg01no537_d19.g1 PHD_FILE: MSMg01no537_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:33 2005
         (673 letters)



>mm_chr14_97730652_97731724
          Length = 1073

 Score = 1301 bits (673), Expect = 0.0
 Identities = 673/673 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatacacttataagagagcaaatacttcaactatttctaactttgatagatactctcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatacacttataagagagcaaatacttcaactatttctaactttgatagatactctcaag 260

                                                                       
Query: 61  tctttaaatttcacattattgctagccattttgtttttctttgataaataatcctgtttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctttaaatttcacattattgctagccattttgtttttctttgataaataatcctgtttg 320

                                                                       
Query: 121 aacattagtgattatgcttaaagaaagcctggagttcttttccaaatataaacattttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacattagtgattatgcttaaagaaagcctggagttcttttccaaatataaacattttaa 380

                                                                       
Query: 181 aaattattatttgctttcctgaactatttggttattccccacttactccatggggaaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaattattatttgctttcctgaactatttggttattccccacttactccatggggaaact 440

                                                                       
Query: 241 tacagaatgtcatgttataaaattcctagtatagagtaactctaccagtttcagtatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacagaatgtcatgttataaaattcctagtatagagtaactctaccagtttcagtatttt 500

                                                                       
Query: 301 gatgaatataaatcttaagtgaaaaaaattgccaaaaatattcaaatgtaatcacatata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatgaatataaatcttaagtgaaaaaaattgccaaaaatattcaaatgtaatcacatata 560

                                                                       
Query: 361 aaccactgtaatataatgtaagagtaccttgtataaataagaaaacccggtcaaacagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaccactgtaatataatgtaagagtaccttgtataaataagaaaacccggtcaaacagac 620

                                                                       
Query: 421 atgtctaaaacataactatatttagaattttatatgactttatatttagtcatactggat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtctaaaacataactatatttagaattttatatgactttatatttagtcatactggat 680

                                                                       
Query: 481 ctttgcaattcaatcaagtctgagctgtagggttatttagaatctttctaagtggcagat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctttgcaattcaatcaagtctgagctgtagggttatttagaatctttctaagtggcagat 740

                                                                       
Query: 541 aatagtcttttgcaacttggaataagaagagtctttaaaatattctttcagatcacatct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatagtcttttgcaacttggaataagaagagtctttaaaatattctttcagatcacatct 800

                                                                       
Query: 601 ttataattttatactaaaatatctgtctataaaatgattcccttcaataaagcatagact 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttataattttatactaaaatatctgtctataaaatgattcccttcaataaagcatagact 860

                        
Query: 661 caaatatttatat 673
           |||||||||||||
Sbjct: 861 caaatatttatat 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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