BAC Information

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BAC

Clone NameMSMg01-537G02
Chromosome14 (Build37)
Map Location 11,100,943 - 11,101,554
singlet/doubletsinglet
Overlap geneFhit
Upstream geneLOC100042415
Downstream geneLOC100041974, LOC667030, EG382843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537G02.T7 (MSMg01no537_g02.b1)MSMg01-537G02.TJ (MSMg01no537_g02.g1)
ACCAG604366AG604367
length753752
length of high quality
(start - end)
631 (48 - 678)613 (80 - 692)
definitionCHROMAT_FILE: MSMg01no537_g02.b1 PHD_FILE: MSMg01no537_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:44 2005CHROMAT_FILE: MSMg01no537_g02.g1 PHD_FILE: MSMg01no537_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:15:44 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTGGTGGTATTTTTAGGGTTGCTTATATATACTATCATGTCA
TCTGCAAATAGTGATATTTTGACTACTTTCTTTACAATTTGTATCCCTTT
GATCTACTTTTGTTGTCTAATTGCTCTGGCTAGGATTTCAAGTACTATAT
TGAAATAGGTAGGGAGAGAGTGGCCAGCCTTGCCTAGTCCCTGATTTTAG
TGGGATTGCTTCAACTTTCTTTACATTGAGTTTGATTTTGGCTACTGGAT
TGCTGTATATTGCTTTTATTTTGTTTAGGCATGAGCCTTGAATTCATGAT
CTTTCCTAGATTTTTATCACGAATGAGTGTTAGATTTTGTCAACTGCTTT
GTGAGCATTGAATGAGGTGATCATGTTTCCCCCCCCCCCTTGAGTTTCTT
TATATAGCAGATTACGTTGGTGGATTTCCATATGTTGAATTATCCCTGCA
TCCCTGCGATGAAGCCTACTTGATCAGTAGGGATGATCATTTTTATGTGT
TCTTGGATTCAGTTTGCAAGAATTTTTTGAGTATTTTTGCATTGATATTC
ATAAGGAAAATTGGTCTGAAGTTCTCTTTCTTTGTTGGGTCTTTGTGTGG
TTTATGTATCAGAGTAATTATGGCTTCATGGAAGGAATTAAGTAAAGTAC
CTTCTCTTTCTATTTTGTGGAATAGTTTGAGGACTATTGGAATTAGGTGT
TCT
NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTGACAATTTTTCAGTGTC
TTCTGTTTTCAAATAAAGGCTTTCTGCCCAGATGCTCCAAATTATATGAA
CCCAATAAAAGATCCTGACAGAGAGTAAAAAATTATTTAAGTCCCTAGAC
CTGTGTCCGAAATAGCCCCATTGTTCCAGGATGTCAGGTGTTTGCGGTTT
TTGCCTTTCTATAGCCCAATGCCAGGTGTTAGTGGTTTTTGTGTCTTTAT
AAACCCCTTACGCATTGAGCTCGTTGTTGACTCCTCTATGTGGGATATGA
TTCGTCCCCAGTGCACTGGTCTTTCCCAAATAAACCTCTTGCAGTTTGCA
TCAAGACCGTTTCTGAGTGATTTGGGGTGTTGCCTCTCCTGAGTCAGAAT
GTGGGGGAGTCCTCACGTTGTGAGTCTTTCATTTGGTGCATTGGCCGGGA
AACTCAATCACCCCTCACACCCAAGAATCGACTTGGAGGTATGGGATTCC
CTCTGGAATGTGTGCGTGCTGGTCAGTGTCTCTGTTCTGAGTGTCTGTTT
TAAACGAACGTGTGCTTGTTGTGTTGGTTTGTTTATCTGTGTCATATCTG
GGATAGTGTGACCACCCTCATCTCCAAAGACCCACTTGGAGATGAGATTT
CGTGTCTGAAACTGTTTCTGTGTGCCTGCGAAGTTCGGAAGTTTCTGTTT
GC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_g02.g1 MSMg01no537_g02.g1 CHROMAT_FILE:
MSMg01no537_g02.g1 PHD_FILE: MSMg01no537_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:44 2005
         (613 letters)



>mm_chr14_11100743_11101755
          Length = 1013

 Score = 1122 bits (580), Expect = 0.0
 Identities = 604/612 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttgacaatttttcagtgtcttctgttttcaaataaaggctttctgcccagatgctcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttgacaatttttcagtgtcttctgttttcaaataaaggctttctgcccagatgctcca 260

                                                                       
Query: 61  aattatatgaacccaataaaagatcctgacagagagtaaaaaattatttaagtccctaga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 aattatatgaacccaataaaagatcctgacagagagtaaaaaattatttaagcccctaga 320

                                                                       
Query: 121 cctgtgtccgaaatagccccattgttccaggatgtcaggtgtttgcggtttttgcctttc 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 cctgtgtccgaaatagccccattgttccaggatgtcaggtgtttgcagtttttgcctttc 380

                                                                       
Query: 181 tatagcccaatgccaggtgttagtggtttttgtgtctttataaaccccttacgcattgag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tatagcccaatgccaggtgttagtggtttttgtgtctttataaaccccttacccattgag 440

                                                                       
Query: 241 ctcgttgttgactcctctatgtgggatatgattcgtccccagtgcactggtctttcccaa 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ctcgttgttgactcctctatgtgggatacgattcgtccccagtgcactggtctttcccaa 500

                                                                       
Query: 301 ataaacctcttgcagtttgcatcaagaccgtttctgagtgatttggggtgttgcctctcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 ataaacctcttgcagtttgcatcaagaccgtttctgagtgatttggggtattgcctctcc 560

                                                                       
Query: 361 tgagtcagaatgtgggggagtcctcacgttgtgagtctttcatttggtgcattggccggg 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagtcagaatgtgggagagtcctcacgttgtgagtctttcatttggtgcattggccggg 620

                                                                       
Query: 421 aaactcaatcacccctcacacccaagaatcgacttggaggtatgggattccctctggaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaactcaatcacccctcacacccaagaatcgacttggaggtatgggattccctctggaat 680

                                                                       
Query: 481 gtgtgcgtgctggtcagtgtctctgttctgagtgtctgttttaaacgaacgtgtgcttgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgtgcgtgctggtcagtgtctctgttctgagtgtctgttttaaacgaacgtgtgcttgt 740

                                                                       
Query: 541 tgtgttggtttgtttatctgtgtcatatctgggatagtgtgaccaccctcatctccaaag 600
           |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 741 tgtgttggtttgtttatctgtgtcatgtctgggatagtgtgaccaccctcgtctccaaag 800

                       
Query: 601 acccacttggag 612
           ||||||||||||
Sbjct: 801 acccacttggag 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)