BAC Information

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BAC

Clone NameMSMg01-537N13
Chromosome14 (Build37)
Map Location 49,688,883 - 49,863,405
singlet/doubletdoublet
Overlap gene4932432K03Rik, LOC218997, Nat12, 1700011H14Rik
Upstream geneMap1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5
Downstream geneSlc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537N13.T7 (MSMg01no537_n13.b1)MSMg01-537N13.TJ (MSMg01no537_n13.g1)
ACCAG604718AG604719
length740736
length of high quality
(start - end)		587 (50 - 636)567 (82 - 648)
definitionCHROMAT_FILE: MSMg01no537_n13.b1 PHD_FILE: MSMg01no537_n13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:20 2005CHROMAT_FILE: MSMg01no537_n13.g1 PHD_FILE: MSMg01no537_n13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,688,883 - 49,689,465)(49,862,839 - 49,863,405)
sequence
NNAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTAGTTTTGTGAAGTTCAGATTCGGACCACTTGGAGCTGAT
GTTAAGGCTAATAGATATGAATTAACACATGCTCTATAACCTTTTAGAAA
AAGATGTAAAGAAATGTGTGATAATCCTAGATCTAAAGGACAGCAACAGA
CCAAAGGACTATTCAAGTTGAGCTTGGCAAACCAATGTGTTTTACTGGGG
TTACTTAAGGGAGCATGGATGACTGACAAGAAAACACCCCAACCACCCAA
AGTCACCTGAGTCAGCTGTTCACTAGTTGTATGGTAGTAGTTGATGTTTT
GAGGAGGGAAGGCCTTAAAAGGTTCATGTCAGGGTCTCTGCTAGCTAATA
ACTTCTATCTTAGCCCCAATTTCATTGCTATGAACAGACACTATGACCAA
GGTACAACATTTAACTGGGACTGGCTTACAGTTTCAGAGGTTCAATTCAT
TAACATCTGGCAGGAAGCATGGCATCATCCAGGCAGACACAGTGCTAGAG
AAGGAGCTGCGAGGTCTGTGTTGTGTCTTGATCGGACTTCAGGCAGGACA
GACTGTCTTCCAGGGAGCTAGAAGGAAGGTCTTAAAGCCCACACCCACAG
TGATACACTTTTCTCAACAAAGCAACACCTGCTAATAGTGCTACTCCCTG
GGGTACCCTCCTCAACTCAGGGCAAACAATGTACCCATTG

NTTTTTCTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTAAGATGAATTTAAAA
GTCTTCTTAAGGAATGTCTTTGCTTTAATACTTATACCCCTTTTCATCCA
TAATTATAAAAGAACCTTAAATACCTTGTTAATGAGATGCAGTTACAAAG
AATCTTGACAGTTGCAAAGGCCATAGTATTAGAATTTCCTTTAGCAGTGA
TGTCACTTTTGAGACTCACAACCCAACCCCACTCCAAAAAAAAGTTGTTA
ACAAGGAAATAGGCTAGAGATTTAAAGGACCTGAATCTAGCACTTGGTTG
ACTGAGTATTTGAAAATGACAACTACTAATACTATTCCAGTCAAACACCA
CATTGGAACTTGATCTATGTCATTCAGGTAGTTCTCTAGGCCAATATAAG
AAAGAAAATACCATCTTTGTTTTCCACATGTGGTTCAGAGAATGAAGTAA
CTTGTCAAATGTCACAGAAGGTATTAGCCAGACCTCTGATACTTCTAACC
TTCAGAGTAAGTTGTCTCCATCTCCCCTTAGTCCCATCCTTTAATCATCC
TAGATGTCACAAGCAGATGTTGAAGTTAGAGACACTGGGGCCAGATATGG
TGGCGCACCACCTTAATCCTAGCCCTTAGGAGGCAGGTGCAAGCAGATCT
CTGTAAGTTCAGGCCAGCCAGGGCTACAGCATGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_n13.b1 MSMg01no537_n13.b1 CHROMAT_FILE:
MSMg01no537_n13.b1 PHD_FILE: MSMg01no537_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:20 2005
         (587 letters)



>mm_chr14_49688679_49689665
          Length = 987

 Score = 1127 bits (583), Expect = 0.0
 Identities = 583/583 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctagttttgtgaagttcagattcggaccacttggagctgatgttaaggctaata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctagttttgtgaagttcagattcggaccacttggagctgatgttaaggctaata 264

                                                                       
Query: 65  gatatgaattaacacatgctctataaccttttagaaaaagatgtaaagaaatgtgtgata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatatgaattaacacatgctctataaccttttagaaaaagatgtaaagaaatgtgtgata 324

                                                                       
Query: 125 atcctagatctaaaggacagcaacagaccaaaggactattcaagttgagcttggcaaacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atcctagatctaaaggacagcaacagaccaaaggactattcaagttgagcttggcaaacc 384

                                                                       
Query: 185 aatgtgttttactggggttacttaagggagcatggatgactgacaagaaaacaccccaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aatgtgttttactggggttacttaagggagcatggatgactgacaagaaaacaccccaac 444

                                                                       
Query: 245 cacccaaagtcacctgagtcagctgttcactagttgtatggtagtagttgatgttttgag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacccaaagtcacctgagtcagctgttcactagttgtatggtagtagttgatgttttgag 504

                                                                       
Query: 305 gagggaaggccttaaaaggttcatgtcagggtctctgctagctaataacttctatcttag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gagggaaggccttaaaaggttcatgtcagggtctctgctagctaataacttctatcttag 564

                                                                       
Query: 365 ccccaatttcattgctatgaacagacactatgaccaaggtacaacatttaactgggactg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccccaatttcattgctatgaacagacactatgaccaaggtacaacatttaactgggactg 624

                                                                       
Query: 425 gcttacagtttcagaggttcaattcattaacatctggcaggaagcatggcatcatccagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcttacagtttcagaggttcaattcattaacatctggcaggaagcatggcatcatccagg 684

                                                                       
Query: 485 cagacacagtgctagagaaggagctgcgaggtctgtgttgtgtcttgatcggacttcagg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cagacacagtgctagagaaggagctgcgaggtctgtgttgtgtcttgatcggacttcagg 744

                                                      
Query: 545 caggacagactgtcttccagggagctagaaggaaggtcttaaa 587
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caggacagactgtcttccagggagctagaaggaaggtcttaaa 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no537_n13.g1 MSMg01no537_n13.g1 CHROMAT_FILE:
MSMg01no537_n13.g1 PHD_FILE: MSMg01no537_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:20 2005
         (567 letters)



>mm_chr14_49862639_49863605
          Length = 967

 Score = 1096 bits (567), Expect = 0.0
 Identities = 567/567 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtaagatgaatttaaaagtcttcttaaggaatgtctttgctttaatacttatacccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 aagtaagatgaatttaaaagtcttcttaaggaatgtctttgctttaatacttatacccct 708

                                                                       
Query: 61  tttcatccataattataaaagaaccttaaataccttgttaatgagatgcagttacaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tttcatccataattataaaagaaccttaaataccttgttaatgagatgcagttacaaaga 648

                                                                       
Query: 121 atcttgacagttgcaaaggccatagtattagaatttcctttagcagtgatgtcacttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 atcttgacagttgcaaaggccatagtattagaatttcctttagcagtgatgtcacttttg 588

                                                                       
Query: 181 agactcacaacccaaccccactccaaaaaaaagttgttaacaaggaaataggctagagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 agactcacaacccaaccccactccaaaaaaaagttgttaacaaggaaataggctagagat 528

                                                                       
Query: 241 ttaaaggacctgaatctagcacttggttgactgagtatttgaaaatgacaactactaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ttaaaggacctgaatctagcacttggttgactgagtatttgaaaatgacaactactaata 468

                                                                       
Query: 301 ctattccagtcaaacaccacattggaacttgatctatgtcattcaggtagttctctaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ctattccagtcaaacaccacattggaacttgatctatgtcattcaggtagttctctaggc 408

                                                                       
Query: 361 caatataagaaagaaaataccatctttgttttccacatgtggttcagagaatgaagtaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 caatataagaaagaaaataccatctttgttttccacatgtggttcagagaatgaagtaac 348

                                                                       
Query: 421 ttgtcaaatgtcacagaaggtattagccagacctctgatacttctaaccttcagagtaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ttgtcaaatgtcacagaaggtattagccagacctctgatacttctaaccttcagagtaag 288

                                                                       
Query: 481 ttgtctccatctccccttagtcccatcctttaatcatcctagatgtcacaagcagatgtt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ttgtctccatctccccttagtcccatcctttaatcatcctagatgtcacaagcagatgtt 228

                                      
Query: 541 gaagttagagacactggggccagatat 567
           |||||||||||||||||||||||||||
Sbjct: 227 gaagttagagacactggggccagatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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