Query= MSMg01no538_c09.b1 MSMg01no538_c09.b1 CHROMAT_FILE:
MSMg01no538_c09.b1 PHD_FILE: MSMg01no538_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:44 2005
(667 letters)
>mm_chr14_76802711_76803777
Length = 1067
Score = 1158 bits (599), Expect = 0.0
Identities = 647/665 (97%), Gaps = 5/665 (0%)
Strand = Plus / Plus
Query: 5 gaattcccggactcaagagaaaaattgtaacagaaattacaaactccccttacttgtgta 64
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattcctggactcaagagaaaaattgtaacagaaattacaaactcccctgacttgtgta 264
Query: 65 ttatataaaaacttatggattaggaaaataatggtgattattggtaattaaaatgaaatt 124
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttatataaaaacgtatggattaggaaaataatggtgattattggtaattaaaatgaaatg 324
Query: 125 cataagtaaaaatcaactcattttaaacatacaatgaattgaaaataatgagctacataa 184
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cataggtaaaaattaactcattttaaacatacaatgaattgaaaataatgagctacataa 384
Query: 185 gcaattcagaaagtcagagtggctgtggtggcttgtgcctataatcatatctctggaggt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcaattcagaaagtcagagtggctgtggtggcttgtgcctataatcatatctctggaggt 444
Query: 245 gctgaggtaggagggctgtcatgagtttaaggttagcctaggctacatagcaagttccag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctgaggtaggagggctgtcatgagtttaaggttagcctaggctacatagcaagttccag 504
Query: 305 gccagactgggcttcataatgagactatttcagaaaacaacaaaagttccataaaaaaaa 364
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 505 gccagactgggcttcataatgagactatttcagagaacaacaaaagttccataaaaaaaa 564
Query: 365 caaaaaaaaaaaacccaaaa--aaactagcaggcactgggcatggtgatacactcccaga 422
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaaaaaaaaaaaa---aaaacaaaactagcaggcactgggcatggtgatacactcccaga 621
Query: 423 gtcccagcactcaggaggcagaagcagaatcattacaaagctggaggacagcctgggcta 482
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gtcccagcactcgggaggcagaagcagaatcattacaaagctggaggacagcctgggcta 681
Query: 483 cacagtgagttccaggatagccaggaacttgtcctcaataacagaatgaaactatgcaaa 542
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 682 cacagtgagttccaggatagccaggaacctgtcctcaataacagaatgaaactatgcaaa 741
Query: 543 ccccaccacgagctggtaggaaaagagaaattatgaaattaatacatggaactaaggaaa 602
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 742 ccccaccacgagctggtaggaaaagagaaattatggaattaatacgtggaactaaggaaa 801
Query: 603 tcggaaaaatgatagaaacggggacagtcagctcacatgagaacaatcccgatgtggaaa 662
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 802 tcggaaaaatgatagaaacggggacagtcagctcacatgagaacaatcccgatatggaaa 861
Query: 663 actct 667
|||||
Sbjct: 862 actct 866
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_c09.g1 MSMg01no538_c09.g1 CHROMAT_FILE:
MSMg01no538_c09.g1 PHD_FILE: MSMg01no538_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:44 2005
(544 letters)
>mm_chr14_76966925_76967867
Length = 943
Score = 849 bits (439), Expect = 0.0
Identities = 476/503 (94%), Gaps = 25/503 (4%)
Strand = Plus / Minus
Query: 1 acagttctcccagaggcctgccccaaggtgcaggctgcagctcaggtcaccctcggatgg 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 acagtactcccagaggcctgccccaaggtgcaggctgcagctcaggtcaccctcggatgg 423
Query: 61 tatgttgtcacacttggacaaaggactctggagtcaaagggcaacttaagccacatgccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tatgttgtcacacttggacaaaggactctggagtcaaagggcaacttaagccacatgccc 363
Query: 121 aatatggaggctgagaggaattcttgggaatcattattgctgagtattgccaactggcct 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 362 aatat-gaggctgagaggaattcttgggaatcattattgctgagtattgccaattggcct 304
Query: 181 gaatcacctcccttctcccccacagactggctctctcctgacctctgctccctgatgaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gaatcacctcccttctcccccacagactggctctctcctgacctctgctccctgatgaaa 244
Query: 241 tggtacagtacttgtgtctgctgagggagaacctccattgtgt----tctctctctctct 296
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 243 tggtacagtacttgtgtctgctgagggagaacctccattgtgttctctctctctctctct 184
Query: 297 ctctctctctctctctctctctctctctctctcttaacctagtttctttttcactctggg 356
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ctctctctctctctctctctctctctctctctcttaacctagtttc-------------- 138
Query: 357 gtttgttttttcactctggggtttgtttttggtttggtttggtttggttttcagatactg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ------tttttcactctggggtttgtttttggtttggtttggtttggttttcagatactg 84
Query: 417 gatcttcctatgtagcccaggctagccttaaccttgcaattcccctgcctctgcttcccg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 gatcttcctatgtagcccaggctagccttaaccttgcaattcccctgcctctgcttcccg 24
Query: 477 agtgctggggttggttacaggtg 499
|||||||||||||||||||||||
Sbjct: 23 agtgctggggttggttacaggtg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 943
Length adjustment: 10
Effective length of query: 534
Effective length of database: 933
Effective search space: 498222
Effective search space used: 498222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
