Query= MSMg01no538_p19.b1 MSMg01no538_p19.b1 CHROMAT_FILE:
MSMg01no538_p19.b1 PHD_FILE: MSMg01no538_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:46 2005
(684 letters)
>mm_chr14_114320737_114321820
Length = 1084
Score = 1201 bits (621), Expect = 0.0
Identities = 666/681 (97%), Gaps = 1/681 (0%)
Strand = Plus / Plus
Query: 5 gaatt-caagaacacatagacgaatcataatctaactttctaggctagtgaattggctta 63
||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 204 gaattccaagaacacatagatgaatcataatctaactttccaggctagtgaattggctta 263
Query: 64 tctggtggagagagctgtcctaagccagatgatctgagttgtgacattggagtctcacat 123
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctggtggagagagctgtcctactccagatgatctgagttgtgacattggagtctcacat 323
Query: 124 agttaaagatcctgatagttgatctctgacttccatactcacgtcacagtatatgccctt 183
||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||
Sbjct: 324 agttaaagatcctgatagttgatctctgacttccatactcatgtcatggtatatgtcctt 383
Query: 184 cctctattcacatatgtagtatgtttttctttaacaaaactaacttctgatatcattaag 243
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 384 cctctattcacacatgtagtatgtttttctttaacaaaactaacttctaatatcattaag 443
Query: 244 atctcataaacaaaaagtaattggttgcacatccttttctaaacaattttagaagactac 303
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atctcataaactaaaagtaattggttgcacatccttttctaaacaattttagaagactac 503
Query: 304 aaagcaatagatgatgggtttggttccctgtggcagagtgtggaagcttcagcagggttc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaagcaatagatgatgggtttggttccctgtggcagagtgtggaagcttcagcagggttc 563
Query: 364 atgcctgcaaaggcaaagaaaggaaactgcttccagacatgaaagacctttacttcactg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atgcctgcaaaggcaaagaaaggaaactgcttccagacatgaaagacctttacttcactg 623
Query: 424 tcatcaaggcatttttgtttgtttgtttgtttgttcattttggtagctgctaaaagaaac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcatcaaggcatttttgtttgtttgtttgtttgttcattttggtagctgctaaaagaaac 683
Query: 484 tctttctgtgcattgaaatacaatttgttacttgagcttcctgttgctagtcagtgcatc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tctttctgtgcattgaaatacaatttgttacttgagcttcctgttgctagtcagtgcatc 743
Query: 544 tcatgcattagatgcaaagtaagctgattttggggacaactacaaaagcggccttcactg 603
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 744 tcatgcattagatgcaaagtaagctgattttggggacaactacaaaaggggccttctctg 803
Query: 604 gaaactaggcagaattttgtatgaatctttgacaactctgatctttttacttctatttat 663
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 804 gaaactaggcagaattttgtatgaatctttgacaactctgatctttttacctctatttat 863
Query: 664 atttaccctgtttttctggtt 684
|||||||||||||||||||||
Sbjct: 864 atttaccctgtttttctggtt 884
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_p19.g1 MSMg01no538_p19.g1 CHROMAT_FILE:
MSMg01no538_p19.g1 PHD_FILE: MSMg01no538_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:46 2005
(436 letters)
>mm_chr14_114488684_114489520
Length = 837
Score = 756 bits (391), Expect = 0.0
Identities = 421/431 (97%), Gaps = 2/431 (0%)
Strand = Plus / Minus
Query: 4 gtgagagaggattctgaactttagactatctttggcctgtggaggtgatctgacatttca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 gtgagagaggattctgaactttagactatctttggcctgtggaggtgatctgacatttca 778
Query: 64 ctaactgacataaggttttatcaacactaattgatgccaaggaactaatgatcacaatat 123
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ctaactgacctaaggttttatcaacactaattgatgccaaggaactaatgatcacaatat 718
Query: 124 ctgaaagacttttcactttctgttatggatttacttatgtctcctc-aaattcatatgct 182
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 717 ctgaaggacttttcactttctgttatggatttacttatgtctcctcaaaattcatatgct 658
Query: 183 gaagcactatcctgcacttagaattgagatcctcttaattaattattaaattagaagaat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gaagcactatcctgcacttagaattgagatcctcttaattaattattaaattagaagaat 598
Query: 243 ttatacatgtgcagatctttactgctgttagaattgccattatagcttttttataaagag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ttatacatgtgcagatctttactgctgttagaattgccattatagcttttttataaagag 538
Query: 303 aaagagacaataggt-ctctattgcacagtccctctgaacaaaagggaatggtgcctgtc 361
||||||||| |||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gaagagacaacaggtgcagaaatgcacagtccctctgaacaaaagggaatggtgcctgtc 478
Query: 362 tacaattcagaaatggacgttagtgaaagttaacctgatagtactaggatcctagacccc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tacaattcagaaatggacgttagtgaaagttaacctgatagtactaggatcctagacccc 418
Query: 422 ttcccttccct 432
|||||||||||
Sbjct: 417 ttcccttccct 407
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 837
Length adjustment: 9
Effective length of query: 427
Effective length of database: 828
Effective search space: 353556
Effective search space used: 353556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
