NNNGGAAACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCTGTTTTCACTCTAAGTGGATTTTGTTCGTGTCTTA
CTATGATGAAGTGGTTAGAATACAGGGGATTACAGAAGATTACCTCAATA
GCTAAGACTCACTCAATATTTAAATGACAGCCCAAACAGAACAAAGGAAA
ATCATCAACCTACTGATAGCTGTTCCAACATTGGGAGGCAGATTTGTCCT
GCTTGATCATGCAACAACAACTACAGGTTCTTCTAACTGTCCCTCTGTAG
CCAGGCCTATAGAAAGTGCACACAGTGTGCTGTTCATATATGCCAGGCAG
GTTTTTTAAGTGCTACCCAACTGGCAACTGGATTAAGTTTCTGTATATGC
TACAAGCAGAGCACATTTCCATAGAGACAGAGGGGTCCTAGGCCTTCTCA
ACACCACACAACTTAACAAATGCAGAGCCAAGACAGAGAATAAGCATGAG
TGCTGTGCTACAAGAAATGGGGAAATGTACTCAGGATGGGGATTTTTTTC
CCACTAGTGGAACTCCATCACCATATTGAGGGGAGGGATCATCCTTCAGC
CTTGGATGACAATAAGCATGGGACCAGAGCATAGTTGTTTTCCTGTTTGT
TTTTCTGATAAATGGTTTTACAAGGTAGTCCAAGTTAGTGGTATGGAACT
GTTGACACTCCTGTCTTAGCTTTC

GGGGCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCCATAAACCACCAACC
CCAGATTCTATAGCAGATGCCAACAAGAGCCTGATGACAGGAGCATGATA
TAGCTGTCCCCTGAGGACCTCTGCCAGTGCCTGCCTAATACATAAGTGGA
TGCTCACAGTTGTCCATTGGATGGAGCACAAGGTCCCCGATGAAGGAGCC
AGAGAAATACCCAAGGAGCTGAAGGGGTCTGAAGCCCCATAGGGGGAACC
TCAATATGAACTAACCAGTACTCCCATAGCTCTTTGGAACAAAACCACCA
ATCAAAGAAAACACTGCTGGAACTTGTGACTCTAGCTGTATATGTAGCAG
AGGTTGGCCTAGTCGGTCATCAATGGGAGGAGAGGCCCTAGGTCCTGTGA
AGATTTTATGTCCCAGTATGGGGAATGCCAGGACTGGGAATGGGAGTGGG
TGGGTTGGAGACAAGGGGGAAAGGAGAAGGGATAGAGGATTTTTCTTTTT
TTCTTTTCCTTTTGCCTTTTTTTTTCTTTCTACCTTTTTCCTCCCCCCTT
CTTTTTTTTTTTCCATTAATTCTTTTTATCTTCTTCCTCTTTCCTTCCCT
TCTTTACTTCTTTTTTCTTGTCTTTCTTTGCCGACTCCTTTCGTTACCTT
TTTTCCTCTTTCTTTTCTCTATTATCTCCTCCTCTTTTCTTCTCACTCTT
TCTTTTTCATTTTTATACTCTCCCTAC

Query= MSMg01no539_a05.b1 MSMg01no539_a05.b1 CHROMAT_FILE:
MSMg01no539_a05.b1 PHD_FILE: MSMg01no539_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:48 2005
         (670 letters)



>mm_chr14_17481203_17482273
          Length = 1071

 Score = 1178 bits (609), Expect = 0.0
 Identities = 654/669 (97%), Gaps = 3/669 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctgttttcactctaagtggattttgttcgtgtcttactatgatgaagtggtta 63
           ||||||||||||   ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 204 ggaattcctgttaaaactctaagtggattttgttcgtgtcttactatgataaagtggtta 263

                                                                       
Query: 64  -gaatacaggggattacagaagattacctcaatagctaagactcactcaatatttaaatg 122
            || ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cga-tacagggcattacataagattacctcaatagctaagactcactcaatatttaaatg 322

                                                                       
Query: 123 acagcccaaacagaacaaaggaaaatcatcaacctactgatagctgttccaacattggga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acagcccaaacagaacaaaggaaaatcatcaacctactgatagctgttccaacattggga 382

                                                                       
Query: 183 ggcagatttgtcctgcttgatcatgcaacaacaactacaggttcttctaactgtccctct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggcagatttgtcctgcttgatcatgcaacaacaactacaggttcttctaactgtccctct 442

                                                                       
Query: 243 gtagccaggcctatagaaagtgcacacagtgtgctgttcatatatgccaggcaggttttt 302
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gtagccaggcctgtagaaagtgcacacagtgtgctgttcatatatgccaggcaggttttt 502

                                                                       
Query: 303 taagtgctacccaactggcaactggattaagtttctgtatatgctacaagcagagcacat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 taagtgctacccaactggcaactggattaagtttctgtatatgctacaagcagagcacat 562

                                                                       
Query: 363 ttccatagagacagaggggtcctaggccttctcaacaccacacaacttaacaaatgcaga 422
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 563 ttccatagagacagaggggtcctaggccttctcaacaccacacaactcaacaaatgcaga 622

                                                                       
Query: 423 gccaagacagagaataagcatgagtgctgtgctacaagaaatggggaaatgtactcagga 482
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gccaagacagagagtaagcatgagtgctgtgctacaagaaatggggaaatgtactcagga 682

                                                                       
Query: 483 tggggattttttt-cccactagtggaactccatcaccatattgaggggagggatcatcct 541
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tggggattttttttcccactagtggaactccatcaccatattgaggggagggatcatcct 742

                                                                       
Query: 542 tcagccttggatgacaataagcatgggaccagagcatagttgttttcctgtttgtttttc 601
           ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 743 tcagccttggatggcaataagcatgggaccagagcatagttgttttgctgtttgtttttc 802

                                                                       
Query: 602 tgataaatggttttacaaggtagtccaagttagtggtatggaactgttgacactcctgtc 661
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 803 tgataaatggttttacaaggtagtccaagttagtgctatggaactgttgacactcctgtc 862

                    
Query: 662 ttagctttc 670
           |||||||||
Sbjct: 863 ttagctttc 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1071
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1061
Effective search space:   700260
Effective search space used:   700260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)