BAC Information

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BAC

Clone NameMSMg01-539C07
Chromosome14 (Build37)
Map Location 112,540,402 - 112,540,532
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk5, LOC100043501
Downstream geneEG223186, LOC100043509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539C07.T7 (MSMg01no539_c07.b1)MSMg01-539C07.TJ (MSMg01no539_c07.g1)
ACCAG605705AG605706
length751750
length of high quality
(start - end)
681 (51 - 731)131 (166 - 296)
definitionCHROMAT_FILE: MSMg01no539_c07.b1 PHD_FILE: MSMg01no539_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:58 2005CHROMAT_FILE: MSMg01no539_c07.g1 PHD_FILE: MSMg01no539_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:17:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGCTACCGATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCACTTTACACTATGAAAGCCAGAAGATCCTGGACAGATG
TTATGCAGACCCTAAGAGAACACAAATGCCAGCCCAAGCTACTATACCCA
GCAAAACTCTCAATTACCATAGATGGAGAAGCCAAAGTATTCCATGAAAA
AACCAAATTAACACGAAATCTTTCCACGAATCTAGCCCTTCAAAGGATAA
TAAAGGGAAAACGCCAACACAAGGACAGAAACTACACCCTAGAAAAAGCA
AGAAAGTGATCCTTCAACAAACCTAATAGAAGACAGCAAGAACAACAGAA
TCCCAACTTTAACAACAAAAATATCAGGAAGCAACAATTACATTTCTTTG
ATTTCTTTTAACATCAATGGAATCAATTCCCCAATAAAAAGACATAGACT
AATAGACTCCCTACACAAAGAGGACCCAACATGTTGTTGCTTACAGGAAA
CCCACCTCAGGGAAAAGGACAGACACTACCTCAGAGTGAAAGGCTGGAAA
ACAATTTTCCAAGCAAATGATCTGAAGATACCATCTGGAGTAGCCATTCT
AATATCGAATAAAATTGACTTCCAACCCAAAGTTATCAAAAAAGACCAGG
AGGGGCACTTCATACACATCAAAGGTAAAATCTACCAAGATGAACTCTCA
AATATGAATATCTATGCTCCAATTACAAGAGCAGCCACATTCATTCATTA
A
CTTCCTCGAAGACTATGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTTTCTGCGAAATCCAGACTTCTATTTTAGTA
AATATTATTATAAATATAATTTCTTACATTGAAATTTGAGATATTTAAAA
AACCTAAAAACCAACCAACTATGATTTTAAATTATTTAACACCTTTAAAA
GATGTTAAGCAAAAATAACACTGATATTTTTACACATTAAATTTAGTGTT
TATTATCATGTGTTACATGTGTTCAGAGAGTATAGGAATGAATGTCGTAA
ACAGAAATGACAAGCATAATAGATTTTTTTGAAATGGCAAACATTAACCA
GCTATGAATTTTGTCAATTCAATGTACTAGAAAGAATAATATAATTTTAC
AAAATATATTAAGAACAAGATAGAATAATATATGTTTTGTGTTCTATGTG
AAACTGTTGGAAGACATTTTATGAAAATGAAGACTTTTTAAATATTAAAT
GTAATATAAATGTCATGTGGTATAATGCTGACTTCAGTGATAATCAGTAT
TTTTCGAGAACTATAGATCTTATGTTAGATAAAAAGTATAAGAACAACTT
ATTACAACTGTGAATATAAAGGTTATTAATGATATATCCCATAATTAGTG
TCAAACTGTACTTATACCTTTCATCAAATAATAATATTTTATCGAGATAA
TAAAATTTAAAAAATAATTTTATATTTGACTTCAATATTTTCTCCAATAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_c07.g1 MSMg01no539_c07.g1 CHROMAT_FILE:
MSMg01no539_c07.g1 PHD_FILE: MSMg01no539_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:59 2005
         (131 letters)



>mm_chr14_112540202_112540732
          Length = 531

 Score =  238 bits (123), Expect = 1e-67
 Identities = 129/131 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caactatgattttaaattatttaacacctttaaaagatgttaagcaaaaataacactgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caactatgattttaaattatttaacacctttaaaagatgttaagcaaaaataacactgat 260

                                                                       
Query: 61  atttttacacattaaatttagtgtttattatcatgtgttacatgtgttcagagagtatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 atttttacacattaaatttagtgtttattatcatgtgttacatgtgttcagagagtagag 320

                      
Query: 121 gaatgaatgtc 131
           | |||||||||
Sbjct: 321 gcatgaatgtc 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 531
Length adjustment: 8
Effective length of query: 123
Effective length of database: 523
Effective search space:    64329
Effective search space used:    64329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)