Query= MSMg01no539_h19.b1 MSMg01no539_h19.b1 CHROMAT_FILE:
MSMg01no539_h19.b1 PHD_FILE: MSMg01no539_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:27 2005
(648 letters)
>mm_chr14_62773607_62774654
Length = 1048
Score = 1189 bits (615), Expect = 0.0
Identities = 638/649 (98%), Gaps = 7/649 (1%)
Strand = Plus / Minus
Query: 4 ggaattcttgccttc----tccagtctgcccaggcctactggggtagggtgggataggat 59
||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 ggaattcttgc---caaagtccagtctgcccaggcctactggggtagggtgggataggat 808
Query: 60 ggagagctgggctcttcacaaatactcagggtcattctcttcagagaaaatagaaaaacc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 ggagagctgggctcttcacaaatactcagggtcattctcttcagagaaaatagaaaaacc 748
Query: 120 aagccctttgctgcagtccctctctggccagtactataagaccttaccagtggtgtcagg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 aagccctttgctgcagtccctctctggccagtactataagaccttaccagtggtgtcagg 688
Query: 180 acacctacagcagctgcccagaagacctcccaggcctgtgatagattggatatccaggaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 acacctacagcagctgcccagaagacctcccaggcctgtgatagattggatatccaggaa 628
Query: 240 gtggcagtcaaatggacatcactaccattgaaactggtcatagcagagttttgagtcatt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gtggcagtcaaatggacatcactaccattgaaactggtcatagcagagttttgagtcatt 568
Query: 300 gttgttgttttgatcaaaacggtaagagaaagctaggtgaaaagtcaggaaacaaggagc 359
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gttgttgttttaatcaaaatggtaagagaaagctaggtgaaaagtcaggaaacaaggagc 508
Query: 360 caaactcctccaggttctgagtgccatattggccaatgctaatgtgtttttcttcccttt 419
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 507 caaactcctccaggttctgagtgccatattggccaatgctagtgtgtttttcttcccttt 448
Query: 420 agtttgggattcttagaaatccctctggctttctgtgctcctgagaaattctacggagca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 agtttgggattcttagaaatccctctggctttctgtgctcctgagaaattctacggagca 388
Query: 480 tgtactctgatgaactatttcctttgtctcagagacagagggaagtatggcttgacagta 539
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 387 tgtactctgatgaactatttcctttgtctcggagacagagggaagtatggcttgacagta 328
Query: 540 ataaatgactatactgtacaattacttaaatatgagtcttcggcaaaagtgaaatgactt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ataaatgactatactgtacaattacttaaatatgagtcttcggcaaaagtgaaatgactt 268
Query: 600 gaggcttcttaacaaataccagctttaagctcagtaaataatggcttgt 648
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gaggcttcttaacaaataccagctttaagctcagtaaataatggcttgt 219
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_h19.g1 MSMg01no539_h19.g1 CHROMAT_FILE:
MSMg01no539_h19.g1 PHD_FILE: MSMg01no539_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:27 2005
(661 letters)
>mm_chr14_62598825_62599885
Length = 1061
Score = 1270 bits (657), Expect = 0.0
Identities = 660/661 (99%)
Strand = Plus / Plus
Query: 1 acagaggcttctggttacctgcacaggaccaagcccttgaaaatttcagcatggagcatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagaggcttctggttacctgcacaggaccaagcccttgaaaatttcagcatggagcatc 260
Query: 61 cagagtcttgggaagcctagtcaatggtggcttagggagaaagagttgtgtttgtgggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagagtcttgggaagcctagtcaatggtggcttagggagaaagagttgtgtttgtgggga 320
Query: 121 agtatggccaatagttggctgcctgtggctagtagttggatggcatcacacccacgcttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtatggccaatagttggctgcctgtggctagtagttggatggcatcacacccacgcttg 380
Query: 181 caccggcagcactaattgaaaacagtggatattatattttaaaaaggagatatgcagttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caccggcagcactaattgaaaacagtggatattatattttaaaaaggagatatgcagttg 440
Query: 241 ggatgaggttgtgttgggggcttcaaaggaattgaagaaaggtatggaaaaatgcatcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggatgaggttgtgttgggggcttcaaaggaattgaagaaaggtatggaaaaatgcatcct 500
Query: 301 atacatgcatgaaattaccaaaagaccagattttaaaatgattctgaaaagacagtgtgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atacatgcatgaaattaccaaaagaccagattttaaaatgattctgaaaagacagtgtgc 560
Query: 361 accatgcatggttagttgatctttttcattcttgctgtgctttcaatcttccattgaaga 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accatgcatggttagttgatccttttcattcttgctgtgctttcaatcttccattgaaga 620
Query: 421 aacaatttcatgcattactttacgcctttctcaccatcaatctgcagtcgatttgaagga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacaatttcatgcattactttacgcctttctcaccatcaatctgcagtcgatttgaagga 680
Query: 481 atggattatgttctcagtaaattgcctctctcaaaagacacttcatcacttttattgaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atggattatgttctcagtaaattgcctctctcaaaagacacttcatcacttttattgaac 740
Query: 541 gaaagaaaggttacattacagttcaagagcatcctcagtacaggatgtggggaagctaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaaagaaaggttacattacagttcaagagcatcctcagtacaggatgtggggaagctaaa 800
Query: 601 tgacagcattatatgaagaaagagccttgagggatgtgtgtgtgtgtgtgtgtgtgtgtg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgacagcattatatgaagaaagagccttgagggatgtgtgtgtgtgtgtgtgtgtgtgtg 860
Query: 661 t 661
|
Sbjct: 861 t 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
