Query= MSMg01no540_j01.b1 MSMg01no540_j01.b1 CHROMAT_FILE:
MSMg01no540_j01.b1 PHD_FILE: MSMg01no540_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:52 2005
(487 letters)
>mm_chr14_8813391_8814277
Length = 887
Score = 611 bits (316), Expect = e-179
Identities = 328/332 (98%)
Strand = Plus / Minus
Query: 1 tctcaaagggaggcaaggctctgcattgctaaacaaatctgtttttactgagcctccatc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 332 tctcaaagggaggcaaggctctgcattgctaaacaaatctgtttttactgagcctccacc 273
Query: 61 ttctagcttttcttacccttcctctcctgggacaaatggcttaacagtctcattcattta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ttctagcttttcttacccttcctctcctgggacaaatggcttaacagtctcattcattta 213
Query: 121 cctaatcattttaaaaaagatttatttatttattttatgtatgtgggtacactgccacag 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 cctaatcatttttaaaaagatttatttatttattttatgtatgtgggtacactgccacag 153
Query: 181 tcttcagacacaccagaaaagggcatcgtatcccattacagatggttgtgagccactatg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 152 tcttcagacacaccagaaaagggcatcgtatcccattacagatggttgtgagccaccatg 93
Query: 241 tggtttctgggaattgaactcgggacctctggaagagcagtcaatgctcttaactgctga 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 tagtttctgggaattgaactcgggacctctggaagagcagtcaatgctcttaactgctga 33
Query: 301 gccatttctccagccccacctaatcatttttt 332
||||||||||||||||||||||||||||||||
Sbjct: 32 gccatttctccagccccacctaatcatttttt 1
Score = 128 bits (66), Expect = 1e-33
Identities = 140/170 (82%), Gaps = 16/170 (9%)
Strand = Plus / Minus
Query: 318 acctaatcattttttttaaaaaattatttacttatttttatatttacttatatatgtgag 377
||||||||| |||||||||| ||||| ||||| |||| |||| |||||| |
Sbjct: 213 acctaatca---tttttaaaaa--gatttatttatt----tatt---ttatgtatgtggg 166
Query: 378 tacactg-tagctgtctttggacacaccagaagagggcatcag-atctcattacagatgg 435
||||||| | | ||||| |||||||||||| |||||||| | ||| ||||||||||||
Sbjct: 165 tacactgcca-cagtcttcagacacaccagaaaagggcatc-gtatcccattacagatgg 108
Query: 436 ttgtgagccaccatgtggttactgggaattgaactcaggatctctggaag 485
|||||||||||||||| ||| ||||||||||||||| ||| |||||||||
Sbjct: 107 ttgtgagccaccatgtagtttctgggaattgaactcgggacctctggaag 58
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_j01.g1 MSMg01no540_j01.g1 CHROMAT_FILE:
MSMg01no540_j01.g1 PHD_FILE: MSMg01no540_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:53 2005
(397 letters)
>mm_chr14_8664263_8665058
Length = 796
Score = 729 bits (377), Expect = 0.0
Identities = 392/397 (98%), Gaps = 1/397 (0%)
Strand = Plus / Plus
Query: 1 aaagccagtctgggctacaaaggaagggagggacaaccctccccccacagcattctccct 60
|||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 201 aaagccagtctgggctccaaaggaagtgagggacaaccctccccccacaacattctccct 260
Query: 61 catgtagttgtggggtagaaaaagacactctggtgtgtctagctcctatcaagcacccag 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 catgtagttgtggggtagaaaaagacactctggtgtgtctagctcctagcaagcacccag 320
Query: 121 gaaatgatagctgattctgtccatagcactggttccacttttatcttgcaaaaacaagtg 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 gaaatgatagctgattctgtccatagcactggttccacttt-atcttgcaaaaacaagtg 379
Query: 181 cattctgctaatgtcctgggtgcagctcctgctgtcttgtcaggatttagtggaaattag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cattctgctaatgtcctgggtgcagctcctgctgtcttgtcaggatttagtggaaattag 439
Query: 241 gagcagtagggagctagaaagacaagaaggtctttccagtatcaatctctgcaaccacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gagcagtagggagctagaaagacaagaaggtctttccagtatcaatctctgcaaccacaa 499
Query: 301 ggccatgctgactgccttgcatgctttcatgtggatcaaagtagcaaagtgagccatctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggccatgctgactgccttgcatgctttcatgtggatcaaagtagcaaagtgagccatctg 559
Query: 361 tttccacccagcacccggatagaagactagcagtcca 397
|||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttccacccagcacccggatagaagactagcagtcca 596
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 796
Length adjustment: 9
Effective length of query: 388
Effective length of database: 787
Effective search space: 305356
Effective search space used: 305356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
