BAC Information

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BAC

Clone NameMSMg01-540M05
Chromosome14 (Build37)
Map Location 29,170,940 - 29,171,518
singlet/doubletsinglet
Overlap geneErc2
Upstream geneArhgef3, Ccdc66, LOC665370
Downstream geneLOC100040206, Wnt5a, LOC100040218, Cacna2d3, Lrtm1, Ppia-ps15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540M05.T7 (MSMg01no540_m05.b1)MSMg01-540M05.TJ (MSMg01no540_m05.g1)
ACCAG606938AG606939
length751316
length of high quality
(start - end)
583 (48 - 630)---
definitionCHROMAT_FILE: MSMg01no540_m05.b1 PHD_FILE: MSMg01no540_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:09 2005CHROMAT_FILE: MSMg01no540_m05.g1 PHD_FILE: MSMg01no540_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTAACTACACCTTCAGATCTACTTCAAAGCCATGTACTTAGAA
ACAGGTGGGAAGGTTTATGCTAAGCTGTGCAATGCAGAGGTTTCAGCTAA
CATGCCCACCTCTGAAGTGCTCCATGATTGAGTCCCCAACTGCAATGGTA
CCTCTAGAAGGCCGTGCAGGAAGTGAGCAGAACACATGGCCCTTCTCACC
CATTACCTCTAACTTCCAAGCAAGGTTTGTATCCTGATGAGAAGAAAACC
ATGCAGGAGGATAAAGCATTGATGTCATATTTATATGTTTAAAGGAAACT
CAAGGGCAATGTCCATAGTTGTGCCTGTGAATGAAGTGTGAGAGAAGAGA
TGTGTTAATCTGGTCTAGATCAGTAGATGTAAGCTCTGTAAGCACAGGAT
GTCTGCCTGTTTTCACCACTTCTGTAGCATCAGGGACTAGACCAGTGCCT
GGCATATGGTAGACATCAATTAATACTTGATGACTGTATGGCAAAGTCCT
TATACACCTGTGCCATCAGTACACATTATATTAAATACCTGTTCTTTGCC
AGATACTCTATAGAATAGGAGCTGATCTAAGACTCCCACAGCAAAGGAAT
TTGTTAGCCCGTGGCTTTTGGCCCTATGAGCAAGGTACGTGGAGTTAGTT
TATGAAGTCTCCAAATGTGCCTGGCTAACACACTGAGCTTTCTAAGTAAA
G
TATTAAACAATTTTTTTTAAAAATCCCTAAACCCCCCCACTTCCCTAAAA
ACATCAAAAAAAAAAAACCCTTTCTATGTCTGAAGTTTATAATTTATCCC
CTTGATACAAATCTAATCACTAATTCTATAATAACAATCTTTATAACCCC
TCCCAATAATTTAAACACTAAAATCAAAACACTCAAAATTTAATTTTGCC
CAACAATTNCCCTACTTGGTAGCTTCGGCGCTGCCGGNCTCNNCNGAGGT
GACCTATAGAAGAATGGCAATCNGCTCACTAAAGTCTAAGCTAAATAACG
AAAAATTATAAAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_m05.b1 MSMg01no540_m05.b1 CHROMAT_FILE:
MSMg01no540_m05.b1 PHD_FILE: MSMg01no540_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:09 2005
         (583 letters)



>mm_chr14_29170736_29171718
          Length = 983

 Score = 1096 bits (567), Expect = 0.0
 Identities = 576/579 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctaactacaccttcagatctacttcaaagccatgtacttagaaacaggtgggaa 64
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctaaccaaaccttcagatctacttcaaagccatgtacttagaaacaggtgggaa 264

                                                                       
Query: 65  ggtttatgctaagctgtgcaatgcagaggtttcagctaacatgcccacctctgaagtgct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtttatgctaagctgtgcaatgcagaggtttcagctaacatgcccacctctgaagtgct 324

                                                                       
Query: 125 ccatgattgagtccccaactgcaatggtacctctagaaggccgtgcaggaagtgagcaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccatgattgagtccccaactgcaatggtacctctagaaggccgtgcaggaagtgagcaga 384

                                                                       
Query: 185 acacatggcccttctcacccattacctctaacttccaagcaaggtttgtatcctgatgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acacatggcccttctcacccattacctctaacttccaagcaaggtttgtatcctgatgag 444

                                                                       
Query: 245 aagaaaaccatgcaggaggataaagcattgatgtcatatttatatgtttaaaggaaactc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagaaaaccatgcaggaggataaagcattgatgtcatatttatatgtttaaaggaaactc 504

                                                                       
Query: 305 aagggcaatgtccatagttgtgcctgtgaatgaagtgtgagagaagagatgtgttaatct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagggcaatgtccatagttgtgcctgtgaatgaagtgtgagagaagagatgtgttaatct 564

                                                                       
Query: 365 ggtctagatcagtagatgtaagctctgtaagcacaggatgtctgcctgttttcaccactt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggtctagatcagtagatgtaagctctgtaagcacaggatgtctgcctgttttcaccactt 624

                                                                       
Query: 425 ctgtagcatcagggactagaccagtgcctggcatatggtagacatcaattaatacttgat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgtagcatcagggactagaccagtgcctggcatatggtagacatcaattaatacttgat 684

                                                                       
Query: 485 gactgtatggcaaagtccttatacacctgtgccatcagtacacattatattaaatacctg 544
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 685 gactgtatggcaaagtccttatacacttgtgccatcagtacacattatattaaatacctg 744

                                                  
Query: 545 ttctttgccagatactctatagaataggagctgatctaa 583
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttctttgccagatactctatagaataggagctgatctaa 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)