Query= MSMg01no540_p24.b1 MSMg01no540_p24.b1 CHROMAT_FILE:
MSMg01no540_p24.b1 PHD_FILE: MSMg01no540_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:28 2005
(518 letters)
>mm_chr14_32648420_32649337
Length = 918
Score = 969 bits (501), Expect = 0.0
Identities = 507/509 (99%)
Strand = Plus / Minus
Query: 5 gaattcagcattcagaattctcattttctgcttctcttgcagctagcattaggcctatcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gaattcagcattcagaattctcattttctgcttctcttgcagctagcattaggcctatcc 489
Query: 65 tacaggctttgcaaaccagataaactaatggagtgtgaaaaatggatgtacacaaacttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tacaggctttgcaaaccagataaactaatggagtgtgaaaaatggatgtacacaaacttt 429
Query: 125 gcacacagcatccattttgatggattaaaggttaggtttctggcagaaaattatcactga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gcacacagcatccattttgatggattaaaggttaggtttctggcagaaaattatcactga 369
Query: 185 tgttgaaagcagaggaaaatgaagcaaagctgaactctaggtatttgatgcttcatgcca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tgttgaaagcagaggaaaatgaagcaaagctgaactctaggtatttgatgcttcatgcca 309
Query: 245 gttctgttgtgtggtttgtgacttctattttcaaaagcccaaccttgttctttgtagctc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gttctgttgtgtggtttgtgacttctattttcaaaagcccaaccttgttctttgtagctc 249
Query: 305 ttccaatgactctaaactgttctcattttaagaaacccctggaggggcagtggtggcaca 364
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 248 ttccaatgactctaaactgttctcattttaagaaacccctggaggggtagtggtggcaca 189
Query: 365 tgcctttaatcccagcacttgggaggcagaggcaggcagatttctgagtttgaggccagc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tgcctttaatcccagcacttgggaggcagaggcaggcagatttctgagtttgaggccagc 129
Query: 425 ctggtctacagagtgagttccaggacagtcaaagttatacagagaaaccctgtcttgaaa 484
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 128 ctggtctacagagtgagttccaggacagtcaacgttatacagagaaaccctgtcttgaaa 69
Query: 485 aaccaaaaaaaaaaaaaaaaaaaaaaaaa 513
|||||||||||||||||||||||||||||
Sbjct: 68 aaccaaaaaaaaaaaaaaaaaaaaaaaaa 40
Score = 159 bits (82), Expect = 5e-43
Identities = 139/158 (87%), Gaps = 4/158 (2%)
Strand = Plus / Plus
Query: 350 ggcagtggtggcacatgcctttaatcccagcacttgggaggcagaggcaggcagatttct 409
||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 756 ggcagtggtggcacacacctttaatcccagcacttgggaggcagaggcaagtagatttct 815
Query: 410 gagtttgaggccagcctggtctacagagtgagttccaggacagtcaaagttatacagaga 469
||||| || ||||||||||||||| ||||||| ||| ||||| || | ||||||||||
Sbjct: 816 gagttcaagaccagcctggtctacaaagtgagtcccaagacagccagggctatacagaga 875
Query: 470 aaccctgtcttgaaaaaccaaaa-aaaa-aaaaaaaaa 505
|||||||||| |||||| |||| |||| |||||||||
Sbjct: 876 aaccctgtctc-aaaaac-aaaacaaaacaaaaaaaaa 911
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no540_p24.g1 MSMg01no540_p24.g1 CHROMAT_FILE:
MSMg01no540_p24.g1 PHD_FILE: MSMg01no540_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:29 2005
(494 letters)
>mm_chr14_32512712_32513606
Length = 895
Score = 949 bits (491), Expect = 0.0
Identities = 494/495 (99%), Gaps = 1/495 (0%)
Strand = Plus / Plus
Query: 1 ctaaaaggaaagagaaag-acacatatggtatacttttagaatcctcttgagttttcttt 59
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaaaggaaagagaaagcacacatatggtatacttttagaatcctcttgagttttcttt 260
Query: 60 tttaaaaggtacaatagaaatgtagtctacggtcttttaaaatgcatatttacccttctc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaaaaggtacaatagaaatgtagtctacggtcttttaaaatgcatatttacccttctc 320
Query: 120 ccactattaattacgaagggttcattacgactcctttatattataaagaaaagatggaga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccactattaattacgaagggttcattacgactcctttatattataaagaaaagatggaga 380
Query: 180 ttatatttataattttgcaaatattttagaaaaatgcttaaaatctagtagtcaatgccc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatatttataattttgcaaatattttagaaaaatgcttaaaatctagtagtcaatgccc 440
Query: 240 tagaaactttatagatttttaagtaatatgcacagatacaaatacattattcattaaata 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagaaactttatagatttttaagtaatatgcacagatacaaatacattattcattaaata 500
Query: 300 cagctcacgtctgtgttttattatactctaaaatatacaggaatcttgatgtactgaaag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagctcacgtctgtgttttattatactctaaaatatacaggaatcttgatgtactgaaag 560
Query: 360 agtgcaagtaaatacaggattcaagcagtcactatttctatgtacatgctcattaattct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtgcaagtaaatacaggattcaagcagtcactatttctatgtacatgctcattaattct 620
Query: 420 tcaaaaaacccacaaaattatcaaatagatcaaaatactgttctgtgttttcacacttta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaaaaaacccacaaaattatcaaatagatcaaaatactgttctgtgttttcacacttta 680
Query: 480 tattcagaaaaacca 494
|||||||||||||||
Sbjct: 681 tattcagaaaaacca 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 895
Length adjustment: 10
Effective length of query: 484
Effective length of database: 885
Effective search space: 428340
Effective search space used: 428340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
