BAC Information

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BAC

Clone NameMSMg01-541A23
Chromosome14 (Build37)
Map Location 32,570,135 - 32,771,046
singlet/doubletdoublet
Overlap geneAnkrd28
Upstream geneSfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd
Downstream geneGalntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik, 1810011H11Rik, 4922501K12Rik, E130203B14Rik, EG665658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541A23.T7 (MSMg01no541_a23.b1)MSMg01-541A23.TJ (MSMg01no541_a23.g1)
ACCAG607164AG607165
length742774
length of high quality
(start - end)		501 (79 - 579)453 (77 - 529)
definitionCHROMAT_FILE: MSMg01no541_a23.b1 PHD_FILE: MSMg01no541_a23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:34 2005CHROMAT_FILE: MSMg01no541_a23.g1 PHD_FILE: MSMg01no541_a23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:20:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,770,549 - 32,771,046)(32,570,135 - 32,570,587)
sequence
TTTTTTATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCCTTCTTACATTTTCCAAGTCTTTGACAAGCCTTTAGA
GCCCTGGGCTTCCCATTTTTCCACAGCATCTTTTGGGTTTTGGAGCCTGG
TGTTGTAAAGGCTCAAAGCTGGACTTTCTCTCATACAGCCACGGTCTCTT
CGCCCACCAGGAGGACACCGGAAGTGACTGCAAGCAGCGTATCAAGTTAG
GTCAGGTGGGTGGGTACACGCGTGGACCCAAATGAGCTTGCCTGTATTGT
TCACGCTTCCGGTAGGTGCATACACGTGTGGACCCGCATGAGCTTTCCAG
TACTGTTCACACTTCCGGTAGGTGGGTACACACGTGGACCCGCATGAGCT
TTCCTGGATTTGTTCATACTTCCAGCTGCTCCACCAGCACCCTGCTTGAG
AGAATGGGCCTCCCTGCCTTTGGTCTATAAAGAGTCTTGGCCAAGAGTGC
CAAGAAAGTGTGGCCTCACCTCAGAGTAACGGGAAGCTCAGAAGCTGGGT
CAGAGAGTGAGCCATTGCTGGGAATCGGATTCATTGGGCCTCTGTGCTCC
AGAAGAANNGAAGGAAGGAGTCAGATGCTGGANGCCTTTCCCAAGCTGCC
CAGGCTCTGGGAGTTTTTCTCACGTGGCTCTGATTTCCAGCTCAGATTCA
AACTGGCTTGGCAATGTCTTCAGCTCACACCCTGATCTATAT

NCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTAAACATCAACAGTGACAAA
GACAACAGAACCGAGAGCCAATGGGAGAGCCAGGCAATGGTGGCACACAC
CTTTAATCCCAGCACTTGAGCGGCAGAGGCAGGCAGAGTTCTGAGTTCGA
GGCCAGCCTGGTCTCCAGAGTGAGCTCCAGGACTGCCAGGGCTATACAGA
GAAACTCTGTCTTGGGGGACAGCCGGGGGGAGGGGTCAGGGGGGGAGCTG
AGACAGAAAGAAGTGAAGCCAAAAAGTAAAATAATAAAATAAAATAAAGA
ACTGGTCAAAGAGAGTAGTTATAGTTAAAAAATTCTCTGCAGTGCTAGGG
ATCTAACCTGATCAGGACCCTGTCCATGCCACATACATGCTTAACAGTTA
GGCCCACCTCAGACAACAGCATATTTGCATAGTAAATATTTAGGCAACTA
GCTGTAAATATTCAGGCCCCTGCAGGCCAAGAATATGAAGGCAGACAACC
TGGCCACAGTGAAGTCAGTGTTTTTTAGTCTAGGTTGAAACATTTTGAGA
TGTTTAGTTTTTTTTTAAGGGCTCAAGTTGTTGAGTTATTGAAGGACAAA
TGGGACCTTCCATCCCCCCATTTGCCTGCTGAAGAAATTCCAGGGTTTCC
CCAAAATTCCCTACCGCTTTTTTCTACATAAAAAACCCCTGGCCCCCCTT
AAAGGTCCTATACCAAGGGAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_a23.b1 MSMg01no541_a23.b1 CHROMAT_FILE:
MSMg01no541_a23.b1 PHD_FILE: MSMg01no541_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:34 2005
         (501 letters)



>mm_chr14_32770346_32771246
          Length = 901

 Score =  932 bits (482), Expect = 0.0
 Identities = 494/498 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   tctttgacaagcctttagagccctgggcttcccatttttccacagcatcttttgggtttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tctttgacaagcctttagagccctgggcttcccatttttccacagcatcttttgggtttt 642

                                                                       
Query: 64  ggagcctggtgttgtaaaggctcaaagctggactttctctcatacagccacggtctcttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 641 ggagcctggtgttgtaaaggctcaaagctggactttctctcatacagccacagtctcttt 582

                                                                       
Query: 124 gcccaccaggaggacaccggaagtgactgcaagcagcgtatcaagttaggtcaggtgggt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gcccaccaggaggacaccggaagtgactgcaagcagcgtatcaagttaggtcaggtgggt 522

                                                                       
Query: 184 gggtacacgcgtggacccaaatgagcttgcctgtattgttcacgcttccggtaggtgcat 243
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 521 gggtacacgcgtggacccaaatgagcttgcctgtattgttcacacttccggtaggtgcat 462

                                                                       
Query: 244 acacgtgtggacccgcatgagctttccagtactgttcacacttccggtaggtgggtacac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 acacgtgtggacccgcatgagctttccagtactgttcacacttccggtaggtgggtacac 402

                                                                       
Query: 304 acgtggacccgcatgagctttcctggatttgttcatacttccagctgctccaccagcacc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 acgtggacccgcatgagctttcctggatttgttcatacttccagctgctccaccagcacc 342

                                                                       
Query: 364 ctgcttgagagaatgggcctccctgcctttggtctataaagagtcttggccaagagtgcc 423
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 341 ctgcttgagagaatgggcctccctgcctttggtctataaagagtcttgaccaagagtgcc 282

                                                                       
Query: 424 aagaaagtgtggcctcacctcagagtaacgggaagctcagaagctgggtcagagagtgag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aagaaagtgtggcctcacctcagagtaacgggaagctcagaagctgggtcagagagtgag 222

                             
Query: 484 ccattgctgggaatcgga 501
           ||||||||||||||||||
Sbjct: 221 ccattgctgggaatcgga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no541_a23.g1 MSMg01no541_a23.g1 CHROMAT_FILE:
MSMg01no541_a23.g1 PHD_FILE: MSMg01no541_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:34 2005
         (453 letters)



>mm_chr14_32569935_32570787
          Length = 853

 Score =  861 bits (445), Expect = 0.0
 Identities = 451/453 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtaaacatcaacagtgacaaagacaacagaaccgagagccaatgggagagccaggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtaaacatcaacagtgacaaagacaacagaaccgagagccaatgggagagccaggca 260

                                                                       
Query: 61  atggtggcacacacctttaatcccagcacttgagcggcagaggcaggcagagttctgagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggtggcacacacctttaatcccagcacttgagcggcagaggcaggcagagttctgagt 320

                                                                       
Query: 121 tcgaggccagcctggtctccagagtgagctccaggactgccagggctatacagagaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcgaggccagcctggtctccagagtgagctccaggactgccagggctatacagagaaact 380

                                                                       
Query: 181 ctgtcttgggggacagccggggggaggggtcagggggggagctgagacagaaagaagtga 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtcttgggggacagccggggggagtggtcagggggggagctgagacagaaagaagtga 440

                                                                       
Query: 241 agccaaaaagtaaaataataaaataaaataaagaactggtcaaagagagtagttatagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccaaaaagtaaaataataaaataaaataaagaactggtcaaagagagtagttatagtt 500

                                                                       
Query: 301 aaaaaattctctgcagtgctagggatctaacctgatcaggaccctgtccatgccacatac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaaattctctgcagtgctagggatctaacctgatcaggaccctgtccatgccacatac 560

                                                                       
Query: 361 atgcttaacagttaggcccacctcagacaacagcatatttgcatagtaaatatttaggca 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgcttaacagttaggcacacctcagacaacagcatatttgcatagtaaatatttaggca 620

                                            
Query: 421 actagctgtaaatattcaggcccctgcaggcca 453
           |||||||||||||||||||||||||||||||||
Sbjct: 621 actagctgtaaatattcaggcccctgcaggcca 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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