BAC Information

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BAC

Clone NameMSMg01-542C20
Chromosome14 (Build37)
Map Location 88,521,763 - 88,719,418
singlet/doubletdoublet
Overlap geneLOC100043780
Upstream geneDiap3, EG665324, Tdrd3, LOC100043317
Downstream geneLOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542C20.T7 (MSMg01no542_c20.b1)MSMg01-542C20.TJ (MSMg01no542_c20.g1)
ACCAG608016AG608017
length733733
length of high quality
(start - end)		658 (54 - 711)649 (85 - 733)
definitionCHROMAT_FILE: MSMg01no542_c20.b1 PHD_FILE: MSMg01no542_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:07 2005CHROMAT_FILE: MSMg01no542_c20.g1 PHD_FILE: MSMg01no542_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,718,765 - 88,719,418)(88,521,763 - 88,522,411)
sequence
NNNGGCCAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAAGACATTAAAAATAATTCCTTGATGTTAGAATTTGT
GTGTTATGACAGGCCAGGCCAAGAATGCATAGATTATAAAAGGATTTGCA
TGACAAATTAAGGGCCCTTTTGTAGGCAATAAAGAGTACTAGAGTCATTT
AAAATAAAACAGAGCTTTTGTTCTTTAAATTTTCCATTTTAAGGAAATGC
TGCTGTGTGGAATTAAAGAATATTTCAATGTGGAATCATTATTGGGTCAA
AACTAACTAAGTGTATAATCATAAATTCACCACTAACTTTTTGTTTTCTC
TGTAAGAAACTGATGAATAAGCTATTGAGCTTGTATAATTAGGATACTCC
AGATATTAGTATATCTAAATAAAATTAAGGATTTCCATTTTATTTGTGTT
TCAGATAAAAATTGAACATTTTAGTATAATCATGCTCTAAGTAATAACTT
AGATATATTTAAGTTGGTAGCATCTTCTGCTTCTGTGCATTAAAATATAA
ACACGATCTATCCCCAGCATGTGCTTGATGGGGTAGATAGCGTTGATTTC
ACTCAGGAGAGAAGATGACCCTTATTTCTCTTCTACTTGGTGGTCATACA
CTACTATTTATGGATATTTTGCCCAGTCGTCATCTAAATAATTAGAATAT
TGTTCCTTAGGGGAAAGATGCAGATCTTGGTGA

NTTTTTAATCAATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATCTTTAGGCTCT
GAGGTCTGGAGGTGGGGAATTGGTAATCAGAGTTCAGAAGATGATGTCTT
TGAAAATGTCTCAGGCTTTTCTTGCTCTCGTGTTGCTGTGGAAGTATGGG
AGGATTTTTCATCCTGTTTTCCTATGTCAGATGAAGAGCCATTCATAGTA
ATTTAGAAACTTATTTTTAGCAGTTGAAAAAAAAAATCAGGGGACCCTGT
CCAATGCTATATTCACATGAGGCACCTATAGCAATAGAAATTCACCTTCC
ATTTCCCCCATTGTTTGGAGTTGATGAAGATCTGGCATTTATGTAGACAT
ATGATTAATATAATTAGATGACCATGTATGGTAATAAAGTAGAGGAACTC
ACGAAGCCCTGTCTGTTCTTTATGCCTTTGTGTCCTCAGAGATAAAAGCA
TTGTTTTCCTCCCAGAACAGTGAGAATACTTCTGTATTTAGGTCTTTATA
GCTTCTTTTATTAGGTCAGAATTCAATGTGTTGAGAACTGAAAATCAGTG
TTGAGATTTCTTTGAATTCTGGGGAGAGGAGCAGTAGACATTGAGAGTGA
TCTTTTAGTCTCTGATATTGTAAGTATCAATGCACTACTCAATTTGTATA
ATATTTCCTAAATCCTATTACTGGTATCTAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_c20.b1 MSMg01no542_c20.b1 CHROMAT_FILE:
MSMg01no542_c20.b1 PHD_FILE: MSMg01no542_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:07 2005
         (658 letters)



>mm_chr14_88718561_88719618
          Length = 1058

 Score = 1265 bits (654), Expect = 0.0
 Identities = 654/654 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagacattaaaaataattccttgatgttagaatttgtgtgttatgacaggccag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 gaattcaagacattaaaaataattccttgatgttagaatttgtgtgttatgacaggccag 799

                                                                       
Query: 65  gccaagaatgcatagattataaaaggatttgcatgacaaattaagggcccttttgtaggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gccaagaatgcatagattataaaaggatttgcatgacaaattaagggcccttttgtaggc 739

                                                                       
Query: 125 aataaagagtactagagtcatttaaaataaaacagagcttttgttctttaaattttccat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aataaagagtactagagtcatttaaaataaaacagagcttttgttctttaaattttccat 679

                                                                       
Query: 185 tttaaggaaatgctgctgtgtggaattaaagaatatttcaatgtggaatcattattgggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tttaaggaaatgctgctgtgtggaattaaagaatatttcaatgtggaatcattattgggt 619

                                                                       
Query: 245 caaaactaactaagtgtataatcataaattcaccactaactttttgttttctctgtaaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 caaaactaactaagtgtataatcataaattcaccactaactttttgttttctctgtaaga 559

                                                                       
Query: 305 aactgatgaataagctattgagcttgtataattaggatactccagatattagtatatcta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aactgatgaataagctattgagcttgtataattaggatactccagatattagtatatcta 499

                                                                       
Query: 365 aataaaattaaggatttccattttatttgtgtttcagataaaaattgaacattttagtat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aataaaattaaggatttccattttatttgtgtttcagataaaaattgaacattttagtat 439

                                                                       
Query: 425 aatcatgctctaagtaataacttagatatatttaagttggtagcatcttctgcttctgtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aatcatgctctaagtaataacttagatatatttaagttggtagcatcttctgcttctgtg 379

                                                                       
Query: 485 cattaaaatataaacacgatctatccccagcatgtgcttgatggggtagatagcgttgat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cattaaaatataaacacgatctatccccagcatgtgcttgatggggtagatagcgttgat 319

                                                                       
Query: 545 ttcactcaggagagaagatgacccttatttctcttctacttggtggtcatacactactat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttcactcaggagagaagatgacccttatttctcttctacttggtggtcatacactactat 259

                                                                 
Query: 605 ttatggatattttgcccagtcgtcatctaaataattagaatattgttccttagg 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttatggatattttgcccagtcgtcatctaaataattagaatattgttccttagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no542_c20.g1 MSMg01no542_c20.g1 CHROMAT_FILE:
MSMg01no542_c20.g1 PHD_FILE: MSMg01no542_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:07 2005
         (649 letters)



>mm_chr14_88521563_88522611
          Length = 1049

 Score = 1255 bits (649), Expect = 0.0
 Identities = 649/649 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatctttaggctctgaggtctggaggtggggaattggtaatcagagttcagaagatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctatctttaggctctgaggtctggaggtggggaattggtaatcagagttcagaagatga 260

                                                                       
Query: 61  tgtctttgaaaatgtctcaggcttttcttgctctcgtgttgctgtggaagtatgggagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtctttgaaaatgtctcaggcttttcttgctctcgtgttgctgtggaagtatgggagga 320

                                                                       
Query: 121 tttttcatcctgttttcctatgtcagatgaagagccattcatagtaatttagaaacttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttcatcctgttttcctatgtcagatgaagagccattcatagtaatttagaaacttat 380

                                                                       
Query: 181 ttttagcagttgaaaaaaaaaatcaggggaccctgtccaatgctatattcacatgaggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttagcagttgaaaaaaaaaatcaggggaccctgtccaatgctatattcacatgaggca 440

                                                                       
Query: 241 cctatagcaatagaaattcaccttccatttcccccattgtttggagttgatgaagatctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctatagcaatagaaattcaccttccatttcccccattgtttggagttgatgaagatctg 500

                                                                       
Query: 301 gcatttatgtagacatatgattaatataattagatgaccatgtatggtaataaagtagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcatttatgtagacatatgattaatataattagatgaccatgtatggtaataaagtagag 560

                                                                       
Query: 361 gaactcacgaagccctgtctgttctttatgcctttgtgtcctcagagataaaagcattgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaactcacgaagccctgtctgttctttatgcctttgtgtcctcagagataaaagcattgt 620

                                                                       
Query: 421 tttcctcccagaacagtgagaatacttctgtatttaggtctttatagcttcttttattag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttcctcccagaacagtgagaatacttctgtatttaggtctttatagcttcttttattag 680

                                                                       
Query: 481 gtcagaattcaatgtgttgagaactgaaaatcagtgttgagatttctttgaattctgggg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcagaattcaatgtgttgagaactgaaaatcagtgttgagatttctttgaattctgggg 740

                                                                       
Query: 541 agaggagcagtagacattgagagtgatcttttagtctctgatattgtaagtatcaatgca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agaggagcagtagacattgagagtgatcttttagtctctgatattgtaagtatcaatgca 800

                                                            
Query: 601 ctactcaatttgtataatatttcctaaatcctattactggtatctagaa 649
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctactcaatttgtataatatttcctaaatcctattactggtatctagaa 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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