Query= MSMg01no542_d20.b1 MSMg01no542_d20.b1 CHROMAT_FILE:
MSMg01no542_d20.b1 PHD_FILE: MSMg01no542_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:12 2005
(687 letters)
>mm_chr14_117650308_117651395
Length = 1088
Score = 1299 bits (672), Expect = 0.0
Identities = 681/684 (99%), Gaps = 1/684 (0%)
Strand = Plus / Plus
Query: 5 gaattccagtcctcggatttgtctggccaacaacttcctcctgcttccaagccttccttc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagtcctcggatttgtctggccaacaacttcctcctgcttccaagccttccttc 264
Query: 65 tgtatgtgatctactgagcttaattatagtttctaacccaagtgggtttaggaagattta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtatgtgatctactgagcttaattatagtttctaacccaagtgggtttaggaagattta 324
Query: 125 atgcatggatgcagtatggtagtaggattatctcccatcgaattaaaggtcagagataca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgcatggatgcagtatggtagtaggattatctcccatcgaattaaaggtcagagataca 384
Query: 185 ggagacagaacacacaagaaaaaagaagaaaaaagcaaaggtgaaagctgcataaagaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggagacagaacacacaagaaaaaagaagaaaaaagcaaaggtgaaagctgcataaagaaa 444
Query: 245 tccaatcattcccccattttccaaggaaagtttctttttacacccagactctaccatgca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tccaatcattcccccattttccaaggaaagtttctttttacacccagactctaccatgca 504
Query: 305 gcctcctgcagtcatgtgacacaaaaacatgagagtttttccttctgtagtaaaggaggt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcctcctgcagtcatgtgacacaaaaacatgagagtttttccttctgtagtaaaggaggt 564
Query: 365 aacaagatgggtataactgcatgtacacaggtacccagatataactgcatgtacacaggt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aacaagatgggtataactgcatgtacacaggtacccagatataactgcatgtacacaggt 624
Query: 425 acccagagtctgcagtacaggagcaatctggaaaggaaatgtgctccaagcggagagctg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acccagagtctgcagtacaggagcaatctggaaaggaaatgtgctccaagcggagagctg 684
Query: 485 cccagcagcagttgcacaacagttacaagtatttttttta-aaattcaattacatatttt 543
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 685 cccagcagcagttgcacaacagttataagtattttttttttaaattcaattacatatttt 744
Query: 544 caataacttgtagtatgcattttaaaagctagatgttaggattcttgttatgatttcata 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caataacttgtagtatgcattttaaaagctagatgttaggattcttgttatgatttcata 804
Query: 604 cattgtctcagatccttacccggaaagacacaggactggttttggctccttgtgtgagtg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cattgtctcagatccttacccggaaagacacaggactggttttggctccttgtgtgagtg 864
Query: 664 gctgttcaaacatatacccctgtc 687
||||||||||||||||||||||||
Sbjct: 865 gctgttcaaacatatacccctgtc 888
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1088
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1078
Effective search space: 729806
Effective search space used: 729806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no542_d20.g1 MSMg01no542_d20.g1 CHROMAT_FILE:
MSMg01no542_d20.g1 PHD_FILE: MSMg01no542_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:12 2005
(604 letters)
>mm_chr14_117836566_117837569
Length = 1004
Score = 1075 bits (556), Expect = 0.0
Identities = 592/604 (98%)
Strand = Plus / Minus
Query: 1 ttaaaatatctgaacgtagctttctactcagggttggtgcctaatgctcttcatcataaa 60
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 804 ttaaaatatctgaaggtagctttctactcagggttggtgcctaatgcccttcatcataaa 745
Query: 61 gagagacattttagagtttggtaaacagagactcccgaggacacctttctgtgaaagact 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 744 gagagacattttagagtttggtaaacagagactccagaggacacctttctgtgaaagact 685
Query: 121 gagaaaagaaccctgcacagttattagtgctaacatctgagaaacaagtaaaaatagtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gagaaaagaaccctgcacagttattagtgctaacatctgagaaacaagtaaaaatagtca 625
Query: 181 gtagacaaccttccctttggctccttagtttctttacaggaaaatgaatattttcttatc 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 624 gtagacaaccttccctttggctccttagtttctttacagaaaaatgaatattttcttatc 565
Query: 241 tacttggaacctttacagatcatgatagaccagtccaaatggtattcacattcaggcaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tacttggaacctttacagatcatgatagaccagtccaaatggtattcacattcaggcaga 505
Query: 301 atcagcacaaataagcagaatactgtacacaccgagtgcacacactgagtgtacacactg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atcagcacaaataagcagaatactgtacacaccgagtgcacacactgagtgtacacactg 445
Query: 361 atccatgtttctcagctcatacttcatatggacacttcaaactttaacaaagctgatagc 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atccatgtttcttagctcatacttcatatggacacttcaaactttaacaaagctgatagc 385
Query: 421 ctcagtgaccttaatggattgaataataatataattaaagagatatctttgttagggcat 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 384 ctcagtgaccttaatggattgaataataatgtaattaaagagatatctttgttagggcat 325
Query: 481 gtaggatatactttgtgtttttgtacttccttatatttaaaagatcatagctgagaataa 540
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 324 ataggatatactttgtgtttctgtacttccttatatttaaaagatcatagctgggaataa 265
Query: 541 cacatattcttggaatgccacttgactgcctttctattaaactacttctaaaaaacttgt 600
||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cacatcttcttggaatcccacgtgactgcctttctattaaactacttctaaaaaacttgt 205
Query: 601 tcct 604
||||
Sbjct: 204 tcct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
