Query= MSMg01no543_f21.b1 MSMg01no543_f21.b1 CHROMAT_FILE:
MSMg01no543_f21.b1 PHD_FILE: MSMg01no543_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:43 2005
(610 letters)
>mm_chr14_80964624_80965633
Length = 1010
Score = 1123 bits (581), Expect = 0.0
Identities = 598/607 (98%), Gaps = 7/607 (1%)
Strand = Plus / Plus
Query: 5 gaattcctgtagcatccatgaaaactagtgggggaaacgagctttgtgttcttttccgtg 64
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgtagcagccatgaaaactagggggggaaacgagctttgtgttcttttccgtg 264
Query: 65 acaggcatgtcctttgcctacggtctgttcttcctcccagtgccctttctggctctcctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaggcatgtcctttgcctacggtctgttcttcctcccagtgccctttctggctctcctt 324
Query: 125 tctaagtgtttggactttacctacacttacaactctttatctatatgtgaacacattata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctaagtgtttggactttacctacacttacaactctttatctatatgtgaacacattata 384
Query: 185 ggtcaagattgctctaagagtgaaaacatgaggtctccttcctgagtctggcttgcctca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtcaagattgctctaagagtgaaaacatgaggtctccttcctgagtctggcttgcctca 444
Query: 245 ctcaatatcctacaccatgcactcatctttcaggacagatgtggacttagagttcatctt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcaatatcctacaccatgcactcatctttcaggacagatgtggacttagagttcatctt 504
Query: 305 cctgtgaggtttttttttttttgtctaaatttggatagacatctttacattttcaagact 364
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctgtgaggttttttt------gtctaaatttggatagacatctttacattttcaagact 558
Query: 365 gacatctaactggagggttttggaagccttctgtcttctatcattctctgaaatattata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gacatctaactggagggttttggaagccttctgtcttctatcattctctgaaatattata 618
Query: 425 tacttagaattggtaggagtctttttttttcc-cctaaatgtgtgatagaagtctctagt 483
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 619 tacttagaattggtaggagtctttttttttccacctaaatgtgtgatagaagtctctagt 678
Query: 484 ggaacaattcactcatagagttttctctgtgggaagattttaaaattacaaattcaaatt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ggaacaattcactcatagagttttctctgtgggaagattttaaaattacaaattcaaatt 738
Query: 544 ttgattgacatagagggttccagttttaagttcttttcgtggggtaaatctgtcactttc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttgattgacatagagggttccagttttaagttcttttcgtggggtaaatctgtcactttc 798
Query: 604 taactgc 610
|||||||
Sbjct: 799 taactgc 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_f21.g1 MSMg01no543_f21.g1 CHROMAT_FILE:
MSMg01no543_f21.g1 PHD_FILE: MSMg01no543_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:43 2005
(533 letters)
>mm_chr14_81143837_81144769
Length = 933
Score = 617 bits (319), Expect = 0.0
Identities = 347/361 (96%), Gaps = 8/361 (2%)
Strand = Plus / Minus
Query: 181 gagctcaccattattgtaatagtttttttccataggtttatggctatcatacctatatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 gagctcaccattattgtaatagtttttttccataggtttatggctatcatacctatatta 874
Query: 241 cataaggctataatcttcctatgtgatcttcttgtcccatctatttgtcttatattttgt 300
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 873 cataaggctataatcttcctatgtgttcttcttgtcccatctatttgtcttatactttgt 814
Query: 301 ttacatgggataatgttccaatcacaacaaaatgtgtagatgagtcatgtagcgggatta 360
||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||
Sbjct: 813 ttacatgggataatgttccaatcgcaacaaaatgtgtagatgagtcatatagcgcgatta 754
Query: 361 aaatgcttctaaaatg--------cctctatttggtgtttacatttctgtcttttcaatg 412
||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 753 aaacgcttctaaaatgtcttaatgcctctatttggtgtttacatttctgtcttttcaatg 694
Query: 413 tcgtgaaaacaaggaaaactctaagccacatctttctttctttaactttagtttacttat 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tcgtgaaaacaaggaaaactctaagccacatctttctttctttaactttagtttacttat 634
Query: 473 acattaaatgtttctttttattcatatcatgctgcccaatacttactagctgccataggt 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 acattaaatgtttctttttattcatatcatgctgcccaatacttactagctgccataggt 574
Query: 533 a 533
|
Sbjct: 573 a 573
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
