BAC Information

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BAC

Clone NameMSMg01-543J03
Chromosome14 (Build37)
Map Location 71,445,248 - 71,445,895
singlet/doubletsinglet
Overlap genenone
Upstream gene1700081D17Rik, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2
Downstream geneLOC100043132, LOC100043136, LOC668477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543J03.T7 (MSMg01no543_j03.b1)MSMg01-543J03.TJ (MSMg01no543_j03.g1)
ACCAG609074AG609075
length742754
length of high quality
(start - end)
627 (53 - 679)648 (84 - 731)
definitionCHROMAT_FILE: MSMg01no543_j03.b1 PHD_FILE: MSMg01no543_j03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:59 2005CHROMAT_FILE: MSMg01no543_j03.g1 PHD_FILE: MSMg01no543_j03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCTTTACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTGATCTTTCCACACTTTTATCATGAATGGGTGTTGGA
TCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTG
TCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATT
AAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGTCAGGATGGATGA
TTGCTTTAATGTGTTCTTGGATTCGGTTAGCAAGAATTTTATTGAGGATT
TTTGCATCGATATTCATAGGAGAAATTGGTCTGAAGTTCTCTATCTTTGT
TGAGTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAATG
AGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAGTTTGTGCAGA
ACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCC
GTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTAATAACTGCTTCTA
TTTCTTTAGGTGATATGGGACTGTTTAGATGGTCAACTTGATCCTGACTC
AACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTTCATCCAGGTT
TTCCAGTTTTGTTGAGTATAACCTTTTGTAGAAGGATCTGATGGTGTTTT
GGATTTCTTCAGGATCTGTTGGTATGTCTCCCTTTTCATTCG
NNCCTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATATCAAGCCACCC
TGAGGAGAGGACCAGATAGCAGGCACTGCCCCCTTAAGTAAATGAGGGCA
CTGAGACTGTGGTGAATAAGATGTGCCCAAATCACTGAATTTGTTAGCAA
GATTCTGACTATTCAAGAGTTCTTTTATCTTGTCTCTGTTTCCACAAATC
CAGACCACCTTTACAACCACAACCCACTCTTTCAAACAACTTCAGTCTGC
AATGTCCCCTTTGAGAGTGACTCTTACCATACACCACTGCTCTTGGTTTA
TCCTATGGGTAATGGGCTATCTTGCTCCAGACTGTTAGTAAAGAGCCCAG
AAACTATGTCTTCTCCTTTTCTTGGCCTAGATACAAATGATCTGCTTATA
AAATACTTGAAGAATCAATTCAGAGATTACTTAGCCATGTAGCTTTGGAG
GGCTCTGCAGAAGTCAGACCTACCAGTGTCAACAGTAGGGTGATAAGGGA
GGAAGTTTCTCTCTACACCTCAACTTTTAACTCTTTTGCCATGTCTAATC
CAGGTTTTGTGGGTCAAGGCCATGCATAAAAAGGATCCAAATAAAATAAA
AACCCACATCAGAAATGAGCCTCCAAAGTGATGAGGATCACAGCAGAGAT
CAGTTACCTTGGAGAAAAGCCCTAAGCCTTAATCCAAATTCAAGCATAGG
TCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_j03.g1 MSMg01no543_j03.g1 CHROMAT_FILE:
MSMg01no543_j03.g1 PHD_FILE: MSMg01no543_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:59 2005
         (648 letters)



>mm_chr14_71445048_71446095
          Length = 1048

 Score = 1214 bits (628), Expect = 0.0
 Identities = 643/648 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatatcaagccaccctgaggagaggaccagatagcaggcactgcccccttaagtaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 actatatcaagccaccctgaggagaggaccagatagcaggcactgcccccttaagtaaat 789

                                                                       
Query: 61  gagggcactgagactgtggtgaataagatgtgcccaaatcactgaatttgttagcaagat 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gagggcactgagactgtggtaaataagatgtgcccaaatcactgaatttgttagcaagat 729

                                                                       
Query: 121 tctgactattcaagagttcttttatcttgtctctgtttccacaaatccagaccaccttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tctgactattcaagagttcttttatcttgtctctgtttccacaaatccagaccaccttta 669

                                                                       
Query: 181 caaccacaacccactctttcaaacaacttcagtctgcaatgtcccctttgagagtgactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 caaccacaacccactctttcaaacaacttcagtctgcaatgtcccctttgagagtgactc 609

                                                                       
Query: 241 ttaccatacaccactgctcttggtttatcctatgggtaatgggctatcttgctccagact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttaccatacaccactgctcttggtttatcctatgggtaatgggctatcttgctccagact 549

                                                                       
Query: 301 gttagtaaagagcccagaaactatgtcttctccttttcttggcctagatacaaatgatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gttagtaaagagcccagaaactatgtcttctccttttcttggcctagatacaaatgatct 489

                                                                       
Query: 361 gcttataaaatacttgaagaatcaattcagagattacttagccatgtagctttggagggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 gcttataaaatacttgaagaatcaattcagagattacttagccatgtagctttggagggc 429

                                                                       
Query: 421 tctgcagaagtcagacctaccagtgtcaacagtagggtgataagggaggaagtttctctc 480
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 428 tctgcagaagtcagacctaccagtgttaacagtagggtgataagggaggaagtttctctc 369

                                                                       
Query: 481 tacacctcaacttttaactcttttgccatgtctaatccaggttttgtgggtcaaggccat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tacacctcaacttttaactcttttgccatgtctaatccaggttttgtgggtcaaggccat 309

                                                                       
Query: 541 gcataaaaaggatccaaataaaataaaaacccacatcagaaatgagcctccaaagtgatg 600
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 308 gcataaaaaggatccaaataaaataaaaacgcacatcagaaatgagcctccaaagtgatg 249

                                                           
Query: 601 aggatcacagcagagatcagttaccttggagaaaagccctaagcctta 648
           || |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 248 agcatcacagcagggatcagttaccttggagaaaagccctaagcctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)