Query= MSMg01no543_n06.b1 MSMg01no543_n06.b1 CHROMAT_FILE:
MSMg01no543_n06.b1 PHD_FILE: MSMg01no543_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:18 2005
(654 letters)
>mm_chr14_22199462_22200515
Length = 1054
Score = 1207 bits (624), Expect = 0.0
Identities = 645/652 (98%), Gaps = 4/652 (0%)
Strand = Plus / Minus
Query: 5 gaattcctcatctgttgttgagatggagtctccttgtgtagtctacgctggcccgaagtt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gaattcctcatctgttgttgagatggagtctccttgtgtagtctacgctggcccgaagtt 606
Query: 65 tgtgattctcctgtatctacctcca-aggaattacaactgtgtgcccttctgcccaaatg 123
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 605 tgtgattctcctgtatctacctccacaggaattacaactgtgtgcccttctgcccaaatg 546
Query: 124 aagagagcttttctttttcaaaaattttttacttattattttagatgcttacagaatatg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 545 aagagagcttttctttttcaaaaattttttacttattattttagatgcttacagattatg 486
Query: 184 attatgctgacttggaaataaaatgaagataatgccaatttttcagagatctggcagaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 attatgctgacttggaaataaaatgaagataatgccaatttttcagagatctggcagaga 426
Query: 244 aaaagaaatgctaacctttattctgtaaagatttaattttctataggaaagggcatgaaa 303
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 425 aaaagaaatgctaacctttattctgtaaagacttaattttctataggaaagggcatgaaa 366
Query: 304 gttaaaaaaaaaaaaccagtgaaaaaatcacgagcttacattcttcttcatgacttagtg 363
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gttaaaaaaaaaaaaacagtg-aaaaatcacgagcttacattcttcttcatgacttagtg 307
Query: 364 ccagtaacctggacttcatcgtttttcctcacctagtaatactcttttgtgttctctcg- 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccagtaacctggacttcatcgtttttcctcacctagtaatactcttttgtgttctctcga 247
Query: 423 tctaaatgctctactataaccacatatacatttgtttacatatatatgcacttaacatta 482
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 t-taaatgctctactataaccacatatacatttgtttacatatatatgcacttaacatta 188
Query: 483 agacattcatgtttttctttctagattgtgtgactttgtttaatattatacattctaagt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 agacattcatgtttttctttctagattgtgtgactttgtttaatattatacattctaagt 128
Query: 543 ccatccatttttcctgcaaagtttatgattttattccatttagagatgaaaaatatttta 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 ccatccatttttcctgcaaagtttatgattttattccatttagagatgaaaaatatttta 68
Query: 603 aatatataccagattttcactatccatcaatctggtgataggtatgaaacct 654
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 aatatataccagattttcactatccatcaatctggtgataggtatgaaacct 16
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_n06.g1 MSMg01no543_n06.g1 CHROMAT_FILE:
MSMg01no543_n06.g1 PHD_FILE: MSMg01no543_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:19 2005
(637 letters)
>mm_chr14_22028824_22029859
Length = 1036
Score = 1114 bits (576), Expect = 0.0
Identities = 625/646 (96%), Gaps = 10/646 (1%)
Strand = Plus / Plus
Query: 1 aagttttgggtgtatgcacatgtatacttatgtgtaattgataaactaataattagtgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 aagttttgggtgtatgcacatgtatacttatgtgtaattgataaactaataattagtgca 251
Query: 61 aaagcatccacttagttgtccttgttgtcttacctgttgccgtagtaaaatactctgaaa 120
|||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 252 aaagcatccatttagttgtcctagttgtcttacctgttgctgtagtaaaatactctgaaa 311
Query: 121 acatcttaaggggaaaggtttacgtcacagttcagggtgtgtccaccgtggcaagggaga 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 acatcttaaggggagaggtttacgtcacagttcagggtgtgtccaccgtggcaagggaga 371
Query: 181 aaagcagcaagagcctgaatctgctgcacacactgcatccactgcagcaaacagcagtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aaagcagcaagagcctgaatctgctgcacacactgcatccactgcagcaaacagcagtga 431
Query: 241 tggacgtgtgctcctctgcgcactttctggactctaaagaccagagagtagaactggcca 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 432 tggacgtgtgctcctctgcgcactttctggactctaaagaccagggagtagaactggcca 491
Query: 301 tgctgagtggtattcattctcacagcacttaatgaaa-tcagggtg--------caggca 351
||||||||||||||||||||||||||||||| |||| ||||| || ||||||
Sbjct: 492 cgctgagtggtattcattctcacagcacttaaggaaaatcaggatgatccaccacaggca 551
Query: 352 cacacacatacatgttgctaatgctattctaggtttggtcaagttgacatttaaataccc 411
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cacacacatacatgttgccaatgctattctaggtttggtcaagttgacatttaaataccc 611
Query: 412 atcatagtaataggtgtaatattccatgtatgtaatatacagaaatgttcaaaagaaatt 471
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 612 atcatagtaataggtgtaatattccat-tatgtaatatacagaaatgttcaaaagaaatt 670
Query: 472 gttgtaggacattttctcaatatttaaaattgtaatgcaagtaaaatattagacttaatt 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gttgtaggacattttctcaatatttaaaattgtaatgcaagtaaaatattagacttaatt 730
Query: 532 tataatgtgtttcatcataatttcaaaaatgcattctatatttatctcacaatggataga 591
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 731 tataatgtgtttcatcataatttcaaaaatgcattctatatttatttcacaatggataga 790
Query: 592 atattaaaggatctctttattacttctatgtcattgcttaataccc 637
|||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 791 atattaaaggatctctttattacttctatgtcgttgcttaataccc 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1036
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1026
Effective search space: 643302
Effective search space used: 643302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
