Query= MSMg01no544_h01.b1 MSMg01no544_h01.b1 CHROMAT_FILE:
MSMg01no544_h01.b1 PHD_FILE: MSMg01no544_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:06 2005
(648 letters)
>mm_chr14_75561393_75562442
Length = 1050
Score = 1091 bits (564), Expect = 0.0
Identities = 625/646 (96%), Gaps = 3/646 (0%)
Strand = Plus / Minus
Query: 5 gaattctatagtagccacaaaaggtgggaaatgcagaagcagggggtcacagatttaact 64
||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||
Sbjct: 1034 gaattctatagtagccacaaaaggtgggaaatgcagaagca-gggctcgcagatttaact 976
Query: 65 ccagtgaattcctagttcctgtgatcactatgggcttagtgggaagcatccttagcctca 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 ccagtgaactcctagttcctgtgatcactatgggcttagtgggaagcatccttagcctca 916
Query: 125 ggacggctgatgatctctcggttctttaggaaccccaggcaaagctctgcgatcacgggg 184
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 915 ggacggctgatgatctctcagttctttatgaaccccaggcaaagctctgcgatcacgggg 856
Query: 185 aggagaaggaggctttgccatcactacttccatcattctttcttgagtactaatgagaaa 244
|||| ||||||||||||||||| ||| || ||||||||||||||||||||||||||||||
Sbjct: 855 aggataaggaggctttgccatccctattttcatcattctttcttgagtactaatgagaaa 796
Query: 245 tgggagcgtggtctacaactcagacaggtcatagatttgtgacccttcttcattattgtc 304
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 795 tgggagcgtggtctacaactcagacaggccatagatttgtgacccttcttcattattgtc 736
Query: 305 tctagtgttgggaccataggcatgtgccaccaccgtgattcttcaaag--tgtgtgtgtg 362
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 735 tctagtgttgggaccataggcatgtgccaccactgtgattcttcaaagcatgtgtgtgtg 676
Query: 363 tgttttaatcataaaaagtgtcagaatgaattaaacattggattctccaaaattactctt 422
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tgttttaattataaaaagtgtcagaatgaattaaacattggattctccaaaattactctt 616
Query: 423 ggtggccttagagaacctactgtacttacaaattttcacatgtaaacacctagaagtaga 482
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 615 ggtggccttagagaacctactgaacttacaaattttcacatttaaacacctagaagtaga 556
Query: 483 gtacggtttagaatacatgtgggaagccacatgtgccgttgcagagtggcactggctact 542
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 555 gtacagtttagaatacatgtgggaagccacatgtgccgttgcagagtggcgctggctact 496
Query: 543 gctggccaccacgcataagtttggacaaataaccaatgtgtacatatgcagtaaagcttt 602
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 495 gctggccaccacgcataagtttggacaaacaaccaatgtgtacatatgcagtaaagcttt 436
Query: 603 ttgcgaagacactgcctggcccgggcatgataatgaggctttgaga 648
|||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttgcaaagacactgcctggcccgggcatgataatgaggctttgaga 390
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1050
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1040
Effective search space: 663520
Effective search space used: 663520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_h01.g1 MSMg01no544_h01.g1 CHROMAT_FILE:
MSMg01no544_h01.g1 PHD_FILE: MSMg01no544_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:06 2005
(620 letters)
>mm_chr14_75387763_75388779
Length = 1017
Score = 897 bits (464), Expect = 0.0
Identities = 513/534 (96%), Gaps = 9/534 (1%)
Strand = Plus / Plus
Query: 1 agtttggtccccagcatccacatcaggtggctcacaactgcctgtaactccagctctggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 agtttggtccccagcatccacatcaggtggctcacaactgcctgtaactccagctctggc 254
Query: 61 ggaactaacacttttagcccctgtgggcacctgcacacacacacacacacacacacac-- 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ggaactaacacttttagcccctgtgggcacctgcacacacacacacacacacacacacac 314
Query: 119 ----gtaaaaattaataaaaaataaatatttttaaaaagaaaatggggctggagagatgt 174
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 acacgtaaaagttaataaaaaataaatatttttaaaaagaaaatggggctggagagatgt 374
Query: 175 ctcagaggttaagagcactgactgctcttctgaaggtcctgagtccaattcccagcagcc 234
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 375 ctcagaggttaagagcactgactgctcttctgaaggtcctgagttcaattcccagcagcc 434
Query: 235 acatgatggctcacaaccatctgtaatgagatctgatgccttcttctggggtgtctgaag 294
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 435 acatgatggcccacaaccatctgtaatgggatctgatgccttcttctggggtgtctgagg 494
Query: 295 acagcgacagtgtaattacatattataaataaataaatacatacatctttaaaaaataaa 354
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 495 acagcgacagtgtaattacatataataaataaataaatacatacatctttaaaaaataaa 554
Query: 355 aagaaaatgaatacgttggttgtatgaaaaactttaagtatgaatataaacatcatagtt 414
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 555 aagaaaatgaatacattggttgtatgaaaaactctaagtatgaatataaacatcatagtt 614
Query: 415 atcgaaggcatgcatagaaggatgatttgttacagaaaaatcactcctaactgttcagaa 474
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
Sbjct: 615 atcgaaggcatgcatagaaggat---ttgttacagaaaaatcactcgtaactgttcagca 671
Query: 475 ctgtgaaaagtaataatatggattcctgttattaattgctgaaacccacatttt 528
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 672 ctgtgaaaagtaataatatggattcctgttattaattgctaaaactcacatttt 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1017
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1007
Effective search space: 614270
Effective search space used: 614270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
