BAC Information

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BAC

Clone NameMSMg01-544H11
Chromosome14 (Build37)
Map Location 35,688,002 - 35,853,514
singlet/doubletdoublet
Overlap geneGrid1
Upstream geneGdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341
Downstream gene4930596D02Rik, LOC100040277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544H11.T7 (MSMg01no544_h11.b1)MSMg01-544H11.TJ (MSMg01no544_h11.g1)
ACCAG609759AG609760
length748747
length of high quality
(start - end)		616 (52 - 667)585 (81 - 665)
definitionCHROMAT_FILE: MSMg01no544_h11.b1 PHD_FILE: MSMg01no544_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:08 2005CHROMAT_FILE: MSMg01no544_h11.g1 PHD_FILE: MSMg01no544_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,853,141 - 35,853,514)(35,688,002 - 35,688,586)
sequence
NAAGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAAATAGTTTCTGTAGATACCACTTGACTCAAGAGTAGG
TTGAACACAGGCAGGGTTACTCTTCAAAGGTACAATAAAGAAAAGAAGAA
ATTACAGTGACCTTAAAGTGTCCTGGTCAGATGATAGGGCCAACGTCAGA
AGTGGCAAGCCATGCTTACAGTACATGCAGCTCTTTCATGTGACACAATG
AGAATGGTACTCGTCTACCCATTAGCCTTTCTTTCCAACTCCAATCATGT
AGAAAATATTATATAAATTCTAACACAGGAAATTCTATGCTAAAGTTAAA
AGCATCCAAAATTTGGGGGATAACTTTAGGCTTAAAAACTAAGGCAATAT
AAATGGACTGTAGACATCAATTAATGATGTAAAAAATGTTAGTTCACTCA
GAATGACAACTATATTAAAACAAAATGCTAACAATGAGGAAAATAAGATG
GGATCGCTGAAATTAGAATTTTGTTTGAAAACGAAATGGAGTCTCACCGT
AAGTTCTACAGAATACATTTCTAAATGGTTTCCTGAAATAGTTCCTTCCC
TGGTTACCTTGTCTTAACTCAGTGCCACAGCAGTGCTCATCCAAGGGTTG
GTACTGCCCTTAATCCTTGCCCTGGTATCATATCCCATCCAGCCAAGCTC
ACTTCCAGAGGCCACACAGAGCTTTCTGAAGCATGAGGAGAATGCTAG

GAAGACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGAACTCCAGTTGATGCT
GGAATGAACAGACATCTATTATACTCTGTCTATGTACCATCCTATGCATA
CACACCTATGACAAAATTCAGTTTGTATTTAAGACACTGTAAGAGCTTAA
CAATAACTAAAAATTGTAAAATTACAGCCATACATAGTGATGTAAGTTAT
ATGAATGAAGTATCTCTTTTTCTCAAAATATTCTTTTCTTTCCCCCAGCC
CTCCAAGTGGGAACAAGGGCCTTGGTGCTGGCAAATGTGTTAGGGAGTCT
TGGGGGCTGTGGTGGCCGAGTTTGTAGGAGGTACAGGGAGAAAGGTGAGG
AAACCAACTCTAGATTGATTCCTGAAAGATGGAGAGTTTTCCAGGGAGGT
GGGAAGAGCATCTTTACCATCTCAGAAGATGAGCTACACCAAGGCAGAAT
GAACTCTATTGAGAGCTGAGTGCTGGTTGAGAATCGCCAGGGGTCCCCAA
TACCCCCATGGTCCTAGCATGTAGCTCTGTGCTCACTGAAGCACACCAGT
GAGGCTGACTACACAGCCAAAGAAGAATGCTTATGTAACACCTCAAAATG
CAGTGCTACCAGAATGGAAATGACAGAGCAGACCCCATGGTTCTATTTTA
ATTCTGCGAATTCCCTTCCAGTTCCTGGTGCATGGGCATATTTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_h11.b1 MSMg01no544_h11.b1 CHROMAT_FILE:
MSMg01no544_h11.b1 PHD_FILE: MSMg01no544_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:08 2005
         (616 letters)



>mm_chr14_35852499_35853514
          Length = 1016

 Score =  716 bits (370), Expect = 0.0
 Identities = 373/374 (99%)
 Strand = Plus / Minus

                                                                        
Query: 243  atcatgtagaaaatattatataaattctaacacaggaaattctatgctaaagttaaaagc 302
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1016 atcatgtagaaaatattatataaattctaacacaggaaattctatgctagagttaaaagc 957

                                                                        
Query: 303  atccaaaatttgggggataactttaggcttaaaaactaaggcaatataaatggactgtag 362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956  atccaaaatttgggggataactttaggcttaaaaactaaggcaatataaatggactgtag 897

                                                                        
Query: 363  acatcaattaatgatgtaaaaaatgttagttcactcagaatgacaactatattaaaacaa 422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896  acatcaattaatgatgtaaaaaatgttagttcactcagaatgacaactatattaaaacaa 837

                                                                        
Query: 423  aatgctaacaatgaggaaaataagatgggatcgctgaaattagaattttgtttgaaaacg 482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836  aatgctaacaatgaggaaaataagatgggatcgctgaaattagaattttgtttgaaaacg 777

                                                                        
Query: 483  aaatggagtctcaccgtaagttctacagaatacatttctaaatggtttcctgaaatagtt 542
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776  aaatggagtctcaccgtaagttctacagaatacatttctaaatggtttcctgaaatagtt 717

                                                                        
Query: 543  ccttccctggttaccttgtcttaactcagtgccacagcagtgctcatccaagggttggta 602
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716  ccttccctggttaccttgtcttaactcagtgccacagcagtgctcatccaagggttggta 657

                          
Query: 603  ctgcccttaatcct 616
            ||||||||||||||
Sbjct: 656  ctgcccttaatcct 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no544_h11.g1 MSMg01no544_h11.g1 CHROMAT_FILE:
MSMg01no544_h11.g1 PHD_FILE: MSMg01no544_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:08 2005
         (585 letters)



>mm_chr14_35687802_35688786
          Length = 985

 Score = 1108 bits (573), Expect = 0.0
 Identities = 582/585 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagaactccagttgatgctggaatgaacagacatctattatactctgtctatgtaccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagaactccagttgatgctggaatgaacagacatctattatactctgtctatgtaccat 260

                                                                       
Query: 61  cctatgcatacacacctatgacaaaattcagtttgtatttaagacactgtaagagcttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctatgcatacacacctatgacaaaattcagtttgtatttaagacactgtaagagcttaa 320

                                                                       
Query: 121 caataactaaaaattgtaaaattacagccatacatagtgatgtaagttatatgaatgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caataactaaaaattgtaaaattacagccatacatagtgatgtaagttatatgaatgaag 380

                                                                       
Query: 181 tatctctttttctcaaaatattcttttctttcccccagccctccaagtgggaacaagggc 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatctcttcttctcaaaatattcttttctttcccccagccctccaagtgggaacaagggc 440

                                                                       
Query: 241 cttggtgctggcaaatgtgttagggagtcttgggggctgtggtggccgagtttgtaggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttggtgctggcaaatgtgttagggagtcttgggggctgtggtggccgagtttgtaggag 500

                                                                       
Query: 301 gtacagggagaaaggtgaggaaaccaactctagattgattcctgaaagatggagagtttt 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 gtacagggagaaaggtgaggaaaccaactccagattgattcctgaaagatggagagtttt 560

                                                                       
Query: 361 ccagggaggtgggaagagcatctttaccatctcagaagatgagctacaccaaggcagaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccagggaggtgggaagagcatctttaccatctcagaagatgagctacaccaaggcagaat 620

                                                                       
Query: 421 gaactctattgagagctgagtgctggttgagaatcgccaggggtccccaatacccccatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaactctattgagagctgagtgctggttgagaatcgccaggggtccccaatacccccatg 680

                                                                       
Query: 481 gtcctagcatgtagctctgtgctcactgaagcacaccagtgaggctgactacacagccaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcctagcatgtagctctgtgctcactgaagcacaccagtgaggctgactacacagccaa 740

                                                        
Query: 541 agaagaatgcttatgtaacacctcaaaatgcagtgctaccagaat 585
           |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 741 agaagaatgcttatgtaacacctcgaaatgcagtgctaccagaat 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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