Query= MSMg01no544_k13.b1 MSMg01no544_k13.b1 CHROMAT_FILE:
MSMg01no544_k13.b1 PHD_FILE: MSMg01no544_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:24 2005
(649 letters)
>mm_chr14_108061511_108062559
Length = 1049
Score = 1195 bits (618), Expect = 0.0
Identities = 639/646 (98%), Gaps = 2/646 (0%)
Strand = Plus / Plus
Query: 5 gaattctttacgtgttac-catgactggagcatgtttaaatgaaacaagtagtataaaga 63
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttacgtgg-aggcatgactggagcatgtttaaatgaaacaagtagtataaaga 263
Query: 64 catgtagatattggcactatgaatgagaataaaaagatattctcaaaatttatgtaagaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catgtagatattggcactatgaatgagaataaaaagatattctcaaaatttatgtaagaa 323
Query: 124 gttgtcttaaacttgggtaatgatcccttaggtcttttcctaattgaatgtgtcagttat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttgtcttaaacttgggtaatgatcccttaggtcttttcctaattgaatgtgtcagttat 383
Query: 184 gaaaattgtgactagcacacttaatattttaatttgattttatatgccatgtgtactaac 243
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaaaattgtgactagcgcacttaatattttaatttgattttatatgccatgtgtactaac 443
Query: 244 ttgtttacctgcatctatctatgttgccgatggaagtcacaaggaagcataagatagcct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgtttacctgcatctatctatgttgccgatggaagtcacaaggaagcataagatagcct 503
Query: 304 ggaactggggttacaaatggttatgagggaacatgtgttggagtaaaccaaactatgtct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggaactggggttacaaatggttatgagggaacatgtgttggagtaaaccaaactatgtct 563
Query: 364 gcagtgaaagcaaccagcactctgagccagtgagctatatatctctagtagtaataccga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcagtgaaagcaaccagcactctgagccagtgagctatatatctctagtagtaataccga 623
Query: 424 actgttgaattaaataattactgaaaaaaacccggtggaggttcactaccaagctcaacg 483
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 624 actgttgaattaaataattactgaaaaaaccccggtggaggttcactaccaagctcaacg 683
Query: 484 ctttaggtaagacactcacacagcctttatattttaatataccttaatctgcacaatagc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctttaggtaagacactcacacagcctttatattttaatataccttaatctgcacaatagc 743
Query: 544 tgagccactgccaaatctccacttggttaatccatctcccaccagtaatcccaaattatt 603
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 744 tgagccactgccaaatctccacttggttaatccacctcccaccagtaatcccaaattatt 803
Query: 604 acctattaaactctttattctatttttgctgctctgtacccagagg 649
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 acctattaaactctttattctatttttgctgctctgtacccagagg 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_k13.g1 MSMg01no544_k13.g1 CHROMAT_FILE:
MSMg01no544_k13.g1 PHD_FILE: MSMg01no544_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:24 2005
(573 letters)
>mm_chr14_108236394_108237366
Length = 973
Score = 1071 bits (554), Expect = 0.0
Identities = 554/554 (100%)
Strand = Plus / Minus
Query: 1 attgccttttttcttcttgcactatgactaaagtcatgtgattagaacaatattttccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 attgccttttttcttcttgcactatgactaaagtcatgtgattagaacaatattttccct 495
Query: 61 tgacttacaattggttgccaatacatctctgacacagaatccccaggagaatgcgcacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgacttacaattggttgccaatacatctctgacacagaatccccaggagaatgcgcacac 435
Query: 121 aatggttgtacaagcttagatcatttctttgctttacttagtatgcctctgcttcctttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aatggttgtacaagcttagatcatttctttgctttacttagtatgcctctgcttcctttc 375
Query: 181 tctcttccagcaattatggaaagtttccttttcagcttttatttgcattattgaaatgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tctcttccagcaattatggaaagtttccttttcagcttttatttgcattattgaaatgat 315
Query: 241 atataagtatcatatttattttccagccaaggagaatggtagctagctattaatttgtgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 atataagtatcatatttattttccagccaaggagaatggtagctagctattaatttgtgt 255
Query: 301 atatatgccagtggaggattggggtggggtagggggacgggtaagccagaagacttagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 atatatgccagtggaggattggggtggggtagggggacgggtaagccagaagacttagag 195
Query: 361 aaaacttagagaaaatgagttgtctccttccatgtggatggtagagttcaggtttgctgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 aaaacttagagaaaatgagttgtctccttccatgtggatggtagagttcaggtttgctgg 135
Query: 421 gaagggcctttattcagtgagccacatcataggctatcaatttattattgaacaaataat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gaagggcctttattcagtgagccacatcataggctatcaatttattattgaacaaataat 75
Query: 481 tactgaaataacattgattagaatttaaaacattccttaaaataattttactcctgttga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 tactgaaataacattgattagaatttaaaacattccttaaaataattttactcctgttga 15
Query: 541 gttttgcattggat 554
||||||||||||||
Sbjct: 14 gttttgcattggat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
