BAC Information

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BAC

Clone NameMSMg01-546G14
Chromosome14 (Build37)
Map Location 41,382,153 - 41,382,753
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040439, LOC218945, LOC100040470, LOC382876
Downstream geneSh2d4b, Tspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546G14.T7 (MSMg01no546_g14.b1)MSMg01-546G14.TJ (MSMg01no546_g14.g1)
ACCAG611243AG611244
length729731
length of high quality
(start - end)
599 (39 - 637)601 (70 - 670)
definitionCHROMAT_FILE: MSMg01no546_g14.b1 PHD_FILE: MSMg01no546_g14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:41 2005CHROMAT_FILE: MSMg01no546_g14.g1 PHD_FILE: MSMg01no546_g14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATCATA
TTACACCTTGGTATCTGAGATAGAAGCAGTTGGTTTATCATGTAGTTATT
TTATTCAGCTGGTAAAAATAAATATGAGGCCTGGGCACGCTCATTGGCTC
TAGGCTGCGGCCAGCTCAGAGACGCCCCTCGGGCAGCTCACTGCATGGTT
GGTTGTCTGGTGCCCCACCCCACACCCCCACCCCCACACCCCCACCCTAC
ACCCCCACACACACACACACACACCCCTGCCGCCGCCTGTATTTCCTCCG
CTGCCCTGTGACGTCTACTGTCACCTGCCCTGCCGCCGCCTGCACCATCT
TGGGACAGGATGTATGATTAGGCCACAATCTTCAATGAGTAGACATATTT
CTTTCTGTGGTGTTCTCGGTCACACATTTATGGATTTTCTGAAGGGCAGT
GGAGATTACTGCCAGGCACAGCATGACCTCTATGCAGACAAGTGTACTGT
AGAAATTCATTGCTACTCCACAAAGAAGCCCACATAAGAGTGGATAACCT
GAACACACGTGTGTTGAATTGAAATCTGCTGAGCATTTGACAAGAGCTCA
GACATGGATGGGGTAAACCTCAGTGCACTTCCCTTGTATTGCTCAGTATT
ACTGGATTGAAGACTCACTGCTTCTTGTTAGGAGGTTCATTTCATTGCCC
GTTTCTCCCAATTCATACTCAAAGCACTG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTATGTCTTTGACAATGCAGGGAGGGTAAGAA
GTGCCATATCTGATTTGACGGGTGTCAGTCATTTGAGTAAGAAGACACAC
ATAGTCTTGTCACATGGTTATTACAGACCCTTTGTTGGGGTTAGAAAGCA
TTGAATCACCTTCAATGGACCACTTGAATGTCTCCCATCCTCAGGTAGAA
CTTCTTTTGTGAATGACTACAAAGTGATAAGAGTTCTGTTCTGCTCACTG
AGATCTTATAACAAGATGTGGACAGAGCTTGGTCCAGCTTTCCTTGTGGA
TGTCACTGGGGTTTGGCACAAGTCTTGGAGGCTGTTTAGGGATCAGGGTC
AACTCTGAGTCCTCTTACTTCCCTCCCACAACCTCTGCAACTGTTTCTGC
TACCCCTTCAAGCCTGTGAGAAGTGGTGGGCTCATATGAGCTTCCTTCCT
TGTTTTCTGGATGAGTTCTTTCCTCACTCTCACACTATCTGGACTCTGTG
TAGCACAATGGTTTGTGGCCTAAGGATATTTAGGGGCTAGGTAGGATTTA
TTTTCCTCTTCCTTTCCAATAAGGAGAGATTGTTAAGTCTATAGGCACAT
GGCCAAATATATAGAAGAAAGCCCAGTGTAAATTTATTTGGAAAGCACCA
ATTATAGAAAGGAGAAGAGACTAATGATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_g14.g1 MSMg01no546_g14.g1 CHROMAT_FILE:
MSMg01no546_g14.g1 PHD_FILE: MSMg01no546_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:42 2005
         (601 letters)



>mm_chr14_41381953_41382953
          Length = 1001

 Score = 1154 bits (597), Expect = 0.0
 Identities = 600/601 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgtctttgacaatgcagggagggtaagaagtgccatatctgatttgacgggtgtcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tatgtctttgacaatgcagggagggtaagaagtgccatatctgatttgacgggtgtcagt 742

                                                                       
Query: 61  catttgagtaagaagacacacatagtcttgtcacatggttattacagaccctttgttggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catttgagtaagaagacacacatagtcttgtcacatggttattacagaccctttgttggg 682

                                                                       
Query: 121 gttagaaagcattgaatcaccttcaatggaccacttgaatgtctcccatcctcaggtaga 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 681 gttagaaagcattgaatcaccttcaatgaaccacttgaatgtctcccatcctcaggtaga 622

                                                                       
Query: 181 acttcttttgtgaatgactacaaagtgataagagttctgttctgctcactgagatcttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acttcttttgtgaatgactacaaagtgataagagttctgttctgctcactgagatcttat 562

                                                                       
Query: 241 aacaagatgtggacagagcttggtccagctttccttgtggatgtcactggggtttggcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacaagatgtggacagagcttggtccagctttccttgtggatgtcactggggtttggcac 502

                                                                       
Query: 301 aagtcttggaggctgtttagggatcagggtcaactctgagtcctcttacttccctcccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtcttggaggctgtttagggatcagggtcaactctgagtcctcttacttccctcccac 442

                                                                       
Query: 361 aacctctgcaactgtttctgctaccccttcaagcctgtgagaagtggtgggctcatatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacctctgcaactgtttctgctaccccttcaagcctgtgagaagtggtgggctcatatga 382

                                                                       
Query: 421 gcttccttccttgttttctggatgagttctttcctcactctcacactatctggactctgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttccttccttgttttctggatgagttctttcctcactctcacactatctggactctgt 322

                                                                       
Query: 481 gtagcacaatggtttgtggcctaaggatatttaggggctaggtaggatttattttcctct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtagcacaatggtttgtggcctaaggatatttaggggctaggtaggatttattttcctct 262

                                                                       
Query: 541 tcctttccaataaggagagattgttaagtctataggcacatggccaaatatatagaagaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctttccaataaggagagattgttaagtctataggcacatggccaaatatatagaagaa 202

            
Query: 601 a 601
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)