Query= MSMg01no546_k18.b1 MSMg01no546_k18.b1 CHROMAT_FILE:
MSMg01no546_k18.b1 PHD_FILE: MSMg01no546_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:02 2005
(705 letters)
>mm_chr14_30515365_30516471
Length = 1107
Score = 1301 bits (673), Expect = 0.0
Identities = 695/703 (98%), Gaps = 2/703 (0%)
Strand = Plus / Minus
Query: 5 gaattcttgccactctgataatcagtttcccttccttttggttgttttggcatgatgcca 64
||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 907 gaattcttgccactcagataatcggtttcccttccttttggttgttttggcgtgatgcca 848
Query: 65 gtcaaagaaacctttgtgtcagagagtgcaggcgccttgtttacagttctgaaattgcag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 gtcaaagaaacctttgtgtcagagagtgcaggcgccttgtttacagttctgaaattgcag 788
Query: 125 ccttttctttggttctgtacaggatagagttcgaaggtccttccgtgtggagcttctgct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ccttttctttggttctgtacaggatagagttcgaaggtccttccgtgtggagcttctgct 728
Query: 185 ccagagggctggagatcagacctcatttgtttcccagtctgctcttcagtaggtgggggc 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gcagagggctggagatcagacctcatttgtttcccagtctgctcttcagtaggtgggggc 668
Query: 245 ccttccttcatttcatatgatactagcacccctctttctaccagcagcacctgcctctcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ccttccttcatttcatatgatactagcacccctctttctaccagcagcacctgcctctcc 608
Query: 305 tctgtccacagctggcatctgcaggaggacagggaaatgtggagttgccgctggctctac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tctgtccacagctggcatctgcaggaggacagggaaatgtggagttgccgctggctctac 548
Query: 365 ccagctttgtaggctggcaccagactcgccagggagggctcagtcgaatggccaa--gag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 547 ccagctttgtaggctggcaccagactcgccagggagggctcagtcgaatggccaaaagag 488
Query: 423 aggattaaaacagctccagtaggaaggaaagcagaagtgatactcgattttagtaacaaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aggattaaaacagctccagtaggaaggaaagcagaagtgatactcgattttagtaacaaa 428
Query: 483 aaaaactacatttctgctaacattctcccccaagagtccttgtaccgtagccttgttctt 542
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aaaaactacatttctgctatcattctcccccaagagtccttgtaccgtagccttgttctt 368
Query: 543 tgagctgtgtatgagaatggagtcatctctgaatataaaaggcaagaatatagggactaa 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgagctgtgtatgagaatggagtcatctctgaatataaaaggcaagaatatagggactaa 308
Query: 603 aatatttgacatatgatgaaattttgtggtattttagacagtgagtaaattgatatttat 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aatatttgacatatgatgaaattttgtggtattttagacagtgagtaaattgatatttat 248
Query: 663 ataacccagtatattcatttctccccaaccatccttccttgaa 705
||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 247 ataacccagtatattcatttctcccgaaccatccttccttgaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1107
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1097
Effective search space: 762415
Effective search space used: 762415
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no546_k18.g1 MSMg01no546_k18.g1 CHROMAT_FILE:
MSMg01no546_k18.g1 PHD_FILE: MSMg01no546_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:02 2005
(625 letters)
>mm_chr14_30341072_30342096
Length = 1025
Score = 1185 bits (613), Expect = 0.0
Identities = 622/625 (99%)
Strand = Plus / Plus
Query: 1 tatgaacatttcctgtctcatacgtttcaatttgctattttttaatttaaaatttaaatt 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgaacatttcctgtctcatatgtttcaatttgctattttttaatttaaaatttaaatt 260
Query: 61 taaataaaaacttttatttaaattttaaaataaaaaatttaaatttttaattttattagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaataaaaacttttatttaaattttaaaataaaaaatttaaatttttaattttattagt 320
Query: 121 tctttgagaagtttttacaaattgttttgattatagtcacttcctctctcaactgatccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttgagaagtttttacaaattgttttgattatagtcacttcctctctcaactgatccc 380
Query: 181 agatccaactcctccccttcacgtccaaccttatctttccttcctttctttctttctttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatccaactcctccccttcacgtccaaccttatctttccttcctttctttctttctttt 440
Query: 241 gttcattctacctttaaccaattgtgtcaagtttgcactgctcatatattctaggatgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttcattctacctttaaccaattgtgtcaagtttgcactgctcatatattctaggatgtg 500
Query: 301 tggccttttactgaaacagtttagaaattatcaacaaaattgttgatttcattcccaact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggccttttactgaaacagtttagaaattatcaacaaaattgttgatttcattcccaact 560
Query: 361 taatgcacagcctttggaaactgtcttatcaacagttctcaacagtgttttgaagccaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taatgcacagcctttggaaactgtcttatcaacagttctcaacagtgttttgaagccaga 620
Query: 421 agtatttcccctcatagccattagccactcctagctcctgctgctgctagagtctgcctt 480
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtatttccccccatagctattagccactcctagctcctgctgctgctagagtctgcctt 680
Query: 481 tgctgtctccagcatcccatgtgtgcagtgtatatatttacattgtggtgtagatgcctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgctgtctccagcatcccatgtgtgcagtgtatatatttacattgtggtgtagatgcctt 740
Query: 541 ttataatcatacatatgtagacatacatcagccaagaaacagctaaagaaagttgcttta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttataatcatacatatgtagacatacatcagccaagaaacagctaaagaaagttgcttta 800
Query: 601 atagtacctctggcttctaggaaga 625
|||||||||||||||||||||||||
Sbjct: 801 atagtacctctggcttctaggaaga 825
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
