BAC Information

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BAC

Clone NameMSMg01-546K24
Chromosome14 (Build37)
Map Location 91,369,085 - 91,456,729
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043336
Downstream geneEG639558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546K24.T7 (MSMg01no546_k24.b1)MSMg01-546K24.TJ (MSMg01no546_k24.g1)
ACCAG611452AG611453
length732733
length of high quality
(start - end)
567 (37 - 603)609 (68 - 676)
definitionCHROMAT_FILE: MSMg01no546_k24.b1 PHD_FILE: MSMg01no546_k24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:03 2005CHROMAT_FILE: MSMg01no546_k24.g1 PHD_FILE: MSMg01no546_k24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,456,252 - 91,456,729)(91,369,085 - 91,369,685)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTCAGGATCCGCGGAATTCAC
TCTCGCACCTGCGTACAAGGCTTGTTTACTAGTTAGGCACAGCGGAGGCC
CGTGCCATCTTATACCATCTTATAATGGGGATTGCTCTCGGCACACACAG
CTCTCCTCAGAGATTACTGGCAGCACGCACGCGATTGCTCGCAGCACGTA
CGGGCTCTCCACACACACACACACACACACACACATATACACACACACAC
ACACACGTATATATACGTGTGTGTGTGTGTGTATATGTACTTATTATTAT
ACGTATTATATACGTATTATATATTCCCCTATACATCAGCAGATTCTCCT
ATAAATGTACAGGAATTTGGAGTTTGGTTATATCCTTGAGTTTTCATGGA
CAGTAGAAATGATGTAAACTCAAGTTGTAGGTCATATCACCAAATATATA
CAATATACATGTTGGATCTAGGCCTTTTGTTTTCTATCTTTGTTGTTGTT
GCTGTTGTTCAGACAAATAATCATGATCGTTTTTCCTCCCCAAATCCTCC
TAACTCTTCCCTCCTTTGTATGCACCTAACTTTGTGTTCATCCTCTTTTG
TTCTTACAAAATAGGAAGGGAGGAAGAGCAGAGAAAGAGAGAGAGACAGA
GAGAGAGAGAGAGAGAGAGAGAGATAGAGAGAGAGAGAGAGGTGACATTC
ATCTTCCCCAGCACACACATCTACCTGTCATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGTCTTCTGCAATAGGGAATAGTGTTCCACTTG
GTAGAAGAGGACAATTATTAGCAATTGCGATAGTCTGTAAAATTCTGAAC
ACTTCTTGAGAAAAAAAGGGCATCTCATACCTTGTGTTGAGAATTTTGTA
AGATAGTGTTCTTGTATTAGAGAGAGCATTATCAGTCCAGAAGGAAAATT
TTAATTTAAATTATATATGTGTGTATACACATACACACACACACACACAT
ACACACACACACACACACACACACACACACACACATATATATATATATAT
ATATATATATATATATATATATATATAAAATCTTATATGTATCATAGGTT
CATTTTAGATAGATACTCTAGGATTATATATATATATATATATATATATA
TATATATATATATATATATATATCTTACTGGTCTTTTACCCTCCTGCCTC
CTTGCTCCGTATTTTTCTTTCTCCATATTCCTTAATTAGAACACAATCTT
TTCCCCTTTCTCCATCAGATCATTCTATACTGCTACTCATGTTTTGATTT
TTCTTCCAGTCAACCTTTGAAAGTATCCCAGTTCAACTTCATGGTTTCTG
CAGTTACTATAGGATCTGTATTCTCATCTGATAATTTGGAGCTTGAAGCT
TCTGATGAGAGAGAACAGGAAACATTTGTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_k24.b1 MSMg01no546_k24.b1 CHROMAT_FILE:
MSMg01no546_k24.b1 PHD_FILE: MSMg01no546_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:03 2005
         (567 letters)



>mm_chr14_91455764_91456729
          Length = 966

 Score =  919 bits (475), Expect = 0.0
 Identities = 478/479 (99%), Gaps = 1/479 (0%)
 Strand = Plus / Minus

                                                                       
Query: 89  atggggattgctctcggcacacacagctctcctcagagattactggcagcacgcacgcga 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 atggggattgctctcggcacacacagctctcctcagagattactggcagcacgcacgcga 907

                                                                       
Query: 149 ttgctcgcagcacgtacgggctctccacacacacacacacacacacacacatatacacac 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 ttgctcgcagcacgtacgggctctccacacacacacacacacacacacacatatacacac 847

                                                                       
Query: 209 acacacacacacgtatatatacgtgtgtgtgtgtgtgtatatgtacttattattatacgt 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 acacacacacacgtatatatacgtgtgtgtgtgtgtgtatatgtacttattattatacgt 787

                                                                       
Query: 269 attatatacgtattatatattcccctatacatcagcagattctcctataaatgtacagga 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 attatatacgtattatatattcccctatacatcagcagattctcctataaatgtacagga 727

                                                                       
Query: 329 atttggagtttggttatatccttgagttttcatggacagtagaaatgatgtaaactcaag 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 atttggagtttggttatatccttgagttttcatggacagtagaaatgatgtaaactcaag 667

                                                                       
Query: 389 ttgtaggtcatatcaccaaatatatacaatatacatgttggatctaggccttttgttttc 448
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ttgtaggtcatatcaccaaatatatacaatatacatgttggatctaggccttttgttttc 607

                                                                       
Query: 449 tatctttgttgttgttgctgttgttcagacaaataatcatgatcgtttttcctccccaaa 508
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tatctttgttgttgttgctgttgttcagacaaataatcatgatcgtttttcctccccaaa 547

                                                                      
Query: 509 tcctcctaactcttccctcctttgtatgcacctaactttgtgttcatcctcttttgttc 567
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 546 tcctcctaactcttccctcctttgtatgcacctaactttgtgttcatcctc-tttgttc 489



 Score = 89.7 bits (46), Expect = 5e-22
 Identities = 54/58 (93%), Gaps = 4/58 (6%)
 Strand = Plus / Plus

                                                                     
Query: 197 acatatacacacacacacacacacgtatatatacgtgtgtgtgtgtgtgt--atatgt 252
           ||||||  ||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 803 acatat--acacacacacacacacgtatatatacgtgtgtgtgtgtgtgtgtatatgt 858


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 567
Length of database: 966
Length adjustment: 10
Effective length of query: 557
Effective length of database: 956
Effective search space:   532492
Effective search space used:   532492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no546_k24.g1 MSMg01no546_k24.g1 CHROMAT_FILE:
MSMg01no546_k24.g1 PHD_FILE: MSMg01no546_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:03 2005
         (609 letters)



>mm_chr14_91368877_91369885
          Length = 1009

 Score = 1127 bits (583), Expect = 0.0
 Identities = 599/611 (98%), Gaps = 12/611 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcttctgcaatagggaatagtgttccacttggtagaagaggacaattattagcaattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tgtcttctgcaatagggaatagtgttccacttggtagaagaggacaattattagcaattg 268

                                                                       
Query: 61  cgatagtctgtaaaattctgaacacttcttgagaaaaaaagggcatctcataccttgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cgatagtctgtaaaattctgaacacttcttgagaaaaaaagggcatctcataccttgtgt 328

                                                                       
Query: 121 tgagaattttgtaagatagtgttcttgtattagagagagcattatcagtccagaaggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgagaattttgtaagatagtgttcttgtattagagagagcattatcagtccagaaggaaa 388

                                                                       
Query: 181 attttaatttaaattatatatgtgtgtatacacatacacacacacacacacatacacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 attttaatttaaattatatatgtgtgtatacacatacacacacacacacacatacacaca 448

                                                                       
Query: 241 cacacacacacacacacacacacacacatatatatatatatatatatatatatatatata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cacacacacacacacacacacacacacatatatatatatatatatatatatatatatata 508

                                                                       
Query: 301 tatatatata--aaatcttatatgtatcataggttcattttagatagatactctaggatt 358
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tatatatatataaaatcttatatgtatcataggttcattttagatagatactctaggatt 568

                                                                       
Query: 359 atatatatatatatatatatatatatatatatatatatatatatatatcttactggtctt 418
           ||||||||||||||||||||||||||||||||||||||          ||||||||||||
Sbjct: 569 atatatatatatatatatatatatatatatatatatat----------cttactggtctt 618

                                                                       
Query: 419 ttaccctcctgcctccttgctccgtatttttctttctccatattccttaattagaacaca 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttaccctcctgcctccttgctccgtatttttctttctccatattccttaattagaacaca 678

                                                                       
Query: 479 atcttttcccctttctccatcagatcattctatactgctactcatgttttgatttttctt 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atcttttcccctttctccatcagatcattctatactgctactcatgttttgatttttctt 738

                                                                       
Query: 539 ccagtcaacctttgaaagtatcccagttcaacttcatggtttctgcagttactataggat 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ccagtcaacctttgaaagtatcccagttcaacttcatggtttctgcagttactataggat 798

                      
Query: 599 ctgtattctca 609
           |||||||||||
Sbjct: 799 ctgtattctca 809



 Score =  124 bits (64), Expect = 2e-32
 Identities = 116/140 (82%), Gaps = 18/140 (12%)
 Strand = Plus / Minus

                                                                       
Query: 274 atatatatatatatatatatatatatatatatatataaaatcttatatgtatcataggtt 333
           ||||||||||||||||||||||||||||||||||||| |||| || | ||||| ||   |
Sbjct: 606 atatatatatatatatatatatatatatatatatatataatcctaga-gtatc-ta---t 552

                                                                       
Query: 334 c----attttaga---ta-gatac-tctaggattatatatatatatatatatatatatat 384
           |    ||    ||   || ||||| | || |||| |||||||||||||||||||||||||
Sbjct: 551 ctaaaat----gaacctatgatacatataagattttatatatatatatatatatatatat 496

                               
Query: 385 atatatatatatatatatat 404
           ||||||||||||||||||||
Sbjct: 495 atatatatatatatatatat 476



 Score = 83.9 bits (43), Expect = 3e-20
 Identities = 106/145 (73%), Gaps = 38/145 (26%)
 Strand = Plus / Minus

                                                                       
Query: 272 atatatatatatatatatatatatatatatatatatataa------a--atcttat---- 319
           ||||||||||||||||||||||||||||||||||||||||      |  ||| |||    
Sbjct: 606 atatatatatatatatatatatatatatatatatatataatcctagagtatc-tatctaa 548

                                                                       
Query: 320 -atg----tat----cat---aggttcattttagatagatactctaggattatatatata 367
            |||    |||    |||   ||    |||||  ||| |||   ||    ||||||||||
Sbjct: 547 aatgaacctatgatacatataag----atttt--atatata---ta----tatatatata 501

                                    
Query: 368 tatatatatatatatatatatatat 392
           |||||||||||||||||||||||||
Sbjct: 500 tatatatatatatatatatatatat 476



 Score = 83.9 bits (43), Expect = 3e-20
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                      
Query: 268 atatatatatatatatatatatatatatatatatatatatata 310
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atatatatatatatatatatatatatatatatatatatatata 477



 Score = 81.9 bits (42), Expect = 1e-19
 Identities = 42/42 (100%)
 Strand = Plus / Minus

                                                     
Query: 268 atatatatatatatatatatatatatatatatatatatatat 309
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 atatatatatatatatatatatatatatatatatatatatat 476



 Score = 81.9 bits (42), Expect = 1e-19
 Identities = 42/42 (100%)
 Strand = Plus / Minus

                                                     
Query: 269 tatatatatatatatatatatatatatatatatatatatata 310
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tatatatatatatatatatatatatatatatatatatatata 479



 Score = 76.1 bits (39), Expect = 7e-18
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                  
Query: 367 atatatatatatatatatatatatatatatatatatata 405
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 606 atatatatatatatatatatatatatatatatatatata 568



 Score = 74.2 bits (38), Expect = 3e-17
 Identities = 38/38 (100%)
 Strand = Plus / Minus

                                                 
Query: 369 atatatatatatatatatatatatatatatatatatat 406
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 606 atatatatatatatatatatatatatatatatatatat 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 375
Number of extensions: 131
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 20
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)