BAC Information

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BAC

Clone NameMSMg01-546M04
Chromosome14 (Build37)
Map Location 50,868,174 - 50,868,667
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731
Downstream geneOlfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546M04.T7 (MSMg01no546_m04.b1)MSMg01-546M04.TJ (MSMg01no546_m04.g1)
ACCAG611507AG611508
length733732
length of high quality
(start - end)
420 (39 - 458)492 (70 - 561)
definitionCHROMAT_FILE: MSMg01no546_m04.b1 PHD_FILE: MSMg01no546_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:09 2005CHROMAT_FILE: MSMg01no546_m04.g1 PHD_FILE: MSMg01no546_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TATTATCTCTGTGCCCCATTTTTTAATAGGGTTATTTTGTATTCGGGAGT
CCAACTTCTTGAACTCAGTATATATTGGATATTAGCCCCCTATCGGCTTT
AGTATTGGTAAAGATTTATTCCTGATCTGGTGGTTGCCATTTTCTCTTAC
TGACAGTGTCCTTTCCCTTACAGAAACTTAACAAATTTAAAAGGTCCTAT
TTGTCAATTCTTGATCTTACAGAACAAATCGTTGTTGTTCTGTTCAGGAA
TTTTTCTCCTGTGCCCATATCTTCGGAGCTGTTCCCCACTTTCTCCTTTA
GAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTTCTTGATCCACTTAGAC
TTGAGCTTTGTACAAGGAAATAAGAATGGATCAAAAGGGATGTCCATGAA
CATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAATAAATT
CCTCCCGACACATAATAATCAGAACAACAAATACACTAAATAAAGAAAGA
ATATTAAAAGCAGTATGGGAAAAGGTCAAGTAACATATAAAGGCAGGCCT
ATCAGAATTACACAAGACTTTTCATAATAGCCTATGAAAGCCATAAGATC
CTGGACTGATGTTATACAGATACTAATAGAACACCAATGCCCGCCTCAGC
TTACTTATCCATCCTAACTTTCAAGCACCTTAG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTACCGTCCACCTTAATTTTTACCTAACAA
TCTGTTTCATCATTCCTTTTTGAGACTTTGCGATTACTATTCATCTGCCT
ATCTCCTGTTATCACTTCCTGTCTTCTCCAAAAAAAAAAAAAATCCTAGG
CTCTTTTGACTCTCCAGCATCCCCTATACTTCACTACACCAGCTAAGCAG
AGTTAGCTAAATTCTGTCTGTTTGGTGTCTTCTCCAGACCTTCAGATTTA
TAATATTTTGAGGACATATTTCTCATAATCTACAGTCTGTGAACAAATCA
AACTGTGTTCTGCCATCATCCAATAACTGGACAAGATAATTCTTTCACCT
TGGTCCAAGCCACCATTATCTCTTCTAATTCTGAATCTAAGCTAAACATT
AAGACCTACTCTACCCTGCCACACTTGTTTAAATTAATGTGTTCTGTCAA
TTTAGTCTATTACCAACAACAATTGATAGTATCTTGTCTTTACTAATTCT
CTTGATTAAATTAATTTTGTACATTCAGTTTGCCTGTATGGTATTTATTT
TAAAAACCAGCATTTCTATTCTTCTTACTTATCAGTAACTTCTGTTTACA
CTCTTTGTAAATTAACCCTTGAAAACTATTTCCTCAAATTGTTTTACATT
TCATCCACTGTTGACTCTGTGTGCATGTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_m04.g1 MSMg01no546_m04.g1 CHROMAT_FILE:
MSMg01no546_m04.g1 PHD_FILE: MSMg01no546_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:09 2005
         (492 letters)



>mm_chr14_50868139_50869033
          Length = 895

 Score =  934 bits (483), Expect = 0.0
 Identities = 491/495 (99%), Gaps = 4/495 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaccgtccaccttaatttttacctaacaatctgtttcatcattcctttttgagacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tctaccgtccaccttaatttttacctaacaatctgtttcatcattcctttttgagacttt 470

                                                                       
Query: 61  gcgattactattcatctgcctatctcctgttatcacttcctgtcttctcc---aaaaaaa 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 469 gcgattactattcatctgcctatctcctgttatcacttcctgtcttctccaaaaaaaaaa 410

                                                                       
Query: 118 aaaaaaatcctaggctcttttgactctccagcatcccctatacttcactacaccagctaa 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aaaaaaatcctaggctcttttgactctccagcatcccctatacttcactacaccagctaa 350

                                                                       
Query: 178 gcagagttagctaaattctgtctgtttggtgtcttctccagaccttcagatttataatat 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gcagagttagctaaattctgtctgtttggtgtcttctccagaccttcagatttataatat 290

                                                                       
Query: 238 tttgaggacatatttctcataatctacagtctgtgaacaaatcaaactgtgttctgccat 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tttgaggacatatttctcataatctacagtctgtgaacaaatcaaactgtgttctgccat 230

                                                                       
Query: 298 catccaataactggacaagataattctttcaccttggtccaagccaccattatctcttct 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 catccaataactggacaagataattctttcaccttggtccaagccaccattatctcttct 170

                                                                       
Query: 358 aattctgaatctaagctaaacattaagacctactctaccctgccacacttgtttaaatta 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 aattctgaatctaagctaaacattaagacctactctaccctgccacacttgtttaaatta 110

                                                                       
Query: 418 atgtgttctgtcaatttagtctattaccaacaacaattgatagtatcttgtctttactaa 477
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 109 atgtgttctgtcaatttagtctattaccaacaacaattgatagtatc-tgtctttactaa 51

                          
Query: 478 ttctcttgattaaat 492
           |||||||||||||||
Sbjct: 50  ttctcttgattaaat 36


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 895
Length adjustment: 10
Effective length of query: 482
Effective length of database: 885
Effective search space:   426570
Effective search space used:   426570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)