BAC Information

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BAC

Clone NameMSMg01-547E03
Chromosome14 (Build37)
Map Location 72,019,196 - 72,019,887
singlet/doubletsinglet
Overlap genenone
Upstream geneEpb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2, LOC100043132, LOC100043136
Downstream geneLOC668477, LOC668482, LOC675957, Fndc3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547E03.T7 (MSMg01no547_e03.b1)MSMg01-547E03.TJ (MSMg01no547_e03.g1)
ACCAG611889AG611890
length749754
length of high quality
(start - end)
595 (35 - 629)693 (62 - 754)
definitionCHROMAT_FILE: MSMg01no547_e03.b1 PHD_FILE: MSMg01no547_e03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:50 2005CHROMAT_FILE: MSMg01no547_e03.g1 PHD_FILE: MSMg01no547_e03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAATTCTCACC
TGATGACTACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCT
TAATCATCAGGGAAATGCAAATCAAAACAACCCTAAGATTCCACCTCACA
CCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCG
AGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGC
TTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGAC
ATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGA
AGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAG
CATTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACA
GAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTC
AGGTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACC
TGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACAC
AATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAGGATACCCA
AGATATAAGATACAATTTCCTAAACACATGAAACTCAAGAAAAATGAAGA
CTGAAGTGTGGACACTATGCCCCTCCTTAGAAGTGGGAACAAAACACCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCCTGAAGTACATTTTTTATGAACAATTTATTTCCAACTC
CTGCGGAGTAATGGTAAATATGTACATCAGAATCTCTTCCTAAGATAAAA
TGAGTTAAAAACTAACAATTTAAGAATGAAGATGAATGAAAAGTCATAAA
AATTGGGATTTAGAAACAATAATGGCAGAACAGGAATCAGTGACTGAGAA
AGTAAAAATTAATAGAAATGAAAAGTAGAGGGCCACTTGAAACAGCTAGG
CATAATAAATAGTAAGTGGTGGGGTTAAATATAAACATGTTCATGAGATT
TCAACCATTGTTCTTAAAATTCAAAAAGATATATTTTTCAAATGTATGTT
ATACATTTAAAATCTTCAGGAATTGGATGACTCGCTGGCAAACCCACTGA
CCAGAATGAGCCCCGAAAGAAAACCCAGCCTTCACATTCTGATTACAACA
AATGAGTGGAATTTAAATTACCTTCCCCAAATTACAGTATCATTACATAC
GAACTAGATCTCATCCTGCTTCTTGTTTATCTTATTTTCAACTGCAGAGA
ATTCAGCCATGCTGAGCCCATTTTTCCAGCAGTTGATTTCATGCCTCTTT
TCTGCTGAAAAATGGCTGTTTTCTAAAAGCTGGATTATTCTAGAACAAAG
TCTGAATGGATCCTATGTACCCAAGATTTAGACTCATTGTAACATGATAT
TACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_e03.g1 MSMg01no547_e03.g1 CHROMAT_FILE:
MSMg01no547_e03.g1 PHD_FILE: MSMg01no547_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:50 2005
         (693 letters)



>mm_chr14_72018996_72020088
          Length = 1093

 Score = 1307 bits (676), Expect = 0.0
 Identities = 688/692 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgaagtacattttttatgaacaatttatttccaactcctgcggagtaatggtaaatat 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 cctgaagtacattttttatgaacaatttatttccaactcctgtggagtaatggtaaatat 260

                                                                       
Query: 61  gtacatcagaatctcttcctaagataaaatgagttaaaaactaacaatttaagaatgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtacatcagaatctcttcctaagataaaatgagttaaaaactaacaatttaagaatgaag 320

                                                                       
Query: 121 atgaatgaaaagtcataaaaattgggatttagaaacaataatggcagaacaggaatcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaatgaaaagtcataaaaattgggatttagaaacaataatggcagaacaggaatcagt 380

                                                                       
Query: 181 gactgagaaagtaaaaattaatagaaatgaaaagtagagggccacttgaaacagctaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactgagaaagtaaaaattaatagaaatgaaaagtagagggccacttgaaacagctaggc 440

                                                                       
Query: 241 ataataaatagtaagtggtggggttaaatataaacatgttcatgagatttcaaccattgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataataaatagtaagtggtggggttaaatataaacatgttcatgagatttcaaccattgt 500

                                                                       
Query: 301 tcttaaaattcaaaaagatatatttttcaaatgtatgttatacatttaaaatcttcagga 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 tcttaaaattcaaaaagatatatttttcaaaggtatgttatacatttaaaatcttcagga 560

                                                                       
Query: 361 attggatgactcgctggcaaacccactgaccagaatgagccccgaaagaaaacccagcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attggatgactcgctggcaaacccactgaccagaatgagccccgaaagaaaacccagcct 620

                                                                       
Query: 421 tcacattctgattacaacaaatgagtggaatttaaattaccttccccaaattacagtatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcacattctgattacaacaaatgagtggaatttaaattaccttccccaaattacagtatc 680

                                                                       
Query: 481 attacatacgaactagatctcatcctgcttcttgtttatcttattttcaactgcagagaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attacatacgaactagatctcatcctgcttcttgtttatcttattttcaactgcagagaa 740

                                                                       
Query: 541 ttcagccatgctgagcccatttttccagcagttgatttcatgcctcttttctgctgaaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| 
Sbjct: 741 ttcagccatgctgagcccatttttccagcagttgatttcatgcctctcttctgctgaaag 800

                                                                       
Query: 601 atggctgttttctaaaagctggattattctagaacaaagtctgaatggatcctatgtacc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atggctgttttctaaaagctggattattctagaacaaagtctgaatggatcctatgtacc 860

                                           
Query: 661 caagatttagactcattgtaacatgatattac 692
           ||||||||||||||||||||||||||||||||
Sbjct: 861 caagatttagactcattgtaacatgatattac 892


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)