BAC Information

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BAC

Clone NameB6Ng01-001A16
Chromosome15 (Build37)
Map Location 43,242,807 - 43,243,946
singlet/doubletsinglet
Overlap genenone
Upstream geneAngpt1, Rspo2, LOC675960, Eif3s6
Downstream geneTtc35, LOC100039288, Tmem74, LOC100039309, Trhr, LOC665041, Nudcd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001A16.bB6Ng01-001A16.g
ACCDH839471DH839472
length1,2411,125
definitionDH839471|Mus musculus domesticus DNA, BAC clone: B6Ng01-001A16, 5' end.DH839472|Mus musculus domesticus DNA, BAC clone: B6Ng01-001A16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaacaaagaattaaagttcctaaagaacagtaaaactgaaaatta
atagctcagaaagccaaacaaaaacacaagcagtgtgtttcactgacaaa
gtaaaagatgtggaagagagaatttctggtcttgaagacaaggttagaaa
aaaaattcatagttcagtcaaaatatatttttaaaaaatcagacacaaaa
cttacaaaaatatgttatactatgtgtgctgtataattttatatcaactt
gacacaatctggtgtcatcagagaagaaggcacctcagttgaaaacatgt
ctccatatgatcctgctgtaaggatcaattaatttgtgatcaataagaga
aagtctagcccatgtgggctatacctgggctggtggtcctgggttcttta
agaatgcaggctaagccagcaatgtggagcaagccagtaagcaacaccct
ttcatggcctctgcacctgctcctgcttccgggtttcagccctgcttgag
ttcctgtcctaacatcctccaataaagaattgtgatctgaaagtataagc
cctttcttctatgacttgcttttagtcatgaaatttcattggagcaatag
aaaccctaacaaaagcactatgaaactactaaacgtatgaataacaggta
cagagaaagggaaagaaagccaagtaaaaggaacaaaaaatattaaaaag
aagaaaaaattcaggagaaaaatttttcaatctaaagaaaagagatgtct
atcaaggtacaagagacatatagagtataaaatgtataggaccagagaga
taaaagctctccacaactgataataaaaacactaaatgtgtataactaaa
taataataaaggatacagaaaataagaccaatccctatataaaggtgaac
caattaaattacattgacttttatggagattcttaaagacagaaggtcta
gacagatgttctacaaactctttagaccatagatgccctcccaaactaca
tatccagtaaaatttcaatgacagtcatcaagactaaaatatttcatgat
aaaacaatgtgaacatttctgtctcaaatacagttctaaagcgtacttgc
acgaaaagttcgtctgaaagatggctacttactccagagaaccaagataa
taatgcaaaccgtcatcaaaagttgcaagttgccaccagattgacatgaa
tgtaagagaactagctcataggtgcgtataaactagtacgt
atgcgttgcctttcaaagcctttgcttttgtaagtttattaaagacagtt
atcgaagactagttttatggcttaagtttaatattttatccatctggaat
ctatttcaggataatgagttaggtaagaatctagcttaattagtttccaa
atgactagctaggcatcaaaatacaatttattgactaataaatgttttct
caatagcttatactaaattcccaaatattcttaatactttctaacaaagg
acactaatttttaattgtatttgtattgtactacttttcctactatagag
ttgaataatattttaaatttagtaatgttatcttttaaatacttttaaaa
ttcagatgttccttgataatacagtgtatatatgccacaaaaattatttt
aaatttcctaattgcaatcacagttaatctcataaattggaagtaaatga
aataacaatacttaactttttagaaagaattcctaattgacatcttcagc
attctttaatgtttttgctttttaaaactgcctctgattattactttcta
ttgagaattacatttttgtctctataaacttaaagtacttttaaatatgt
agaggaaatctattattatttttattatcttttttattatcttttaaact
aacattcagttattgttgattttcctttttggagtcaactagagaagtag
ctaaccacttgtaaatagtgcctctatctttgacaacagtttaattttct
attttcattttcttgcttaaatacatttttccaaaagaggaaaaccatca
gagtgtaaggaagtagatgggaaaattttctatggacaatatcatattaa
aacctttaacatatcatagaactctgagtgtgtttttgtcttgggaaatc
acttttgcgtgtattcttcacaatatgatttgttgggggttgtatatcca
atctgcaaggcacacactcacatcatgtttcaacacaattgttagctaat
ctgctagcaacataagccacgtgaaaggacaaattttctgcatgtgcaca
tcgttactgcttgtatagccaatgaagcctgggatagcttttattaatta
tgcaatttctacgtagaaggtcggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_43242807_43243946
seq2: B6Ng01-001A16.g_77_1201

seq1  ATGCGTTGCCTTTCAAAGCCTTTGCTTTTGTAAGTTTATTAAAGACAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTTGCCTTTCAAAGCCTTTGCTTTTGTAAGTTTATTAAAGACAGTT  50

seq1  ATCGAAGACTAGTTTTATGGCTTAAGTTTAATATTTTATCCATCTGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAAGACTAGTTTTATGGCTTAAGTTTAATATTTTATCCATCTGGAAT  100

seq1  CTATTTCAGGATAATGAGTTAGGTAAGAATCTAGCTTAATTAGTTTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCAGGATAATGAGTTAGGTAAGAATCTAGCTTAATTAGTTTCCAA  150

seq1  ATGACTAGCTAGTCATCAAAATACAATTTATTGACTAATAAATGTTTTCT  200
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGACTAGCTAGGCATCAAAATACAATTTATTGACTAATAAATGTTTTCT  200

seq1  CAATAGCTTATACTAAATTCCCAAATATTCTTAATACTTTCTAACAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCTTATACTAAATTCCCAAATATTCTTAATACTTTCTAACAAAGG  250

seq1  ACACTAATTTTTAATTGTATTTGTATTGTACTACTTTTCCTACTATAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAATTTTTAATTGTATTTGTATTGTACTACTTTTCCTACTATAGAG  300

seq1  TTGAATAATATTTTAAATTTAGTAATGTTATCTTTTAAATACTTTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAATATTTTAAATTTAGTAATGTTATCTTTTAAATACTTTTAAAA  350

seq1  TTCAGATGTTCCTTGATAATACAGTGTATATATGCCACAAAAATTATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGTTCCTTGATAATACAGTGTATATATGCCACAAAAATTATTTT  400

seq1  AAATTTCCTAATTGCAATCACAGTTAATCTCATAAATTGGAAGTAAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCTAATTGCAATCACAGTTAATCTCATAAATTGGAAGTAAATGA  450

seq1  AATAACAATACTTAACTTTTTAGAAAGAATTCCTAATTGACATCTTCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAATACTTAACTTTTTAGAAAGAATTCCTAATTGACATCTTCAGC  500

seq1  ATTCTTTAATGTTTTTGCTTTTTAAAACTGCCTCTGATTATTACTTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTAATGTTTTTGCTTTTTAAAACTGCCTCTGATTATTACTTTCTA  550

seq1  TTGAGAATTACATTTTTGTCTCTATAAACTTAAAGTACTTTTAAATATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAATTACATTTTTGTCTCTATAAACTTAAAGTACTTTTAAATATGT  600

seq1  AGAGGAAATCTATTATTATTTTTATTATCTTTTTTATTATCTTTTAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAATCTATTATTATTTTTATTATCTTTTTTATTATCTTTTAAACT  650

seq1  AACATTCAGTTATTGTTGATTTTCCTTTTTGGAGTCAACTAGAGAAGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCAGTTATTGTTGATTTTCCTTTTTGGAGTCAACTAGAGAAGTAG  700

seq1  CTAACCACTTGTAAATAGTGCCTCTATCTTTGACAACAGTTTAATTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCACTTGTAAATAGTGCCTCTATCTTTGACAACAGTTTAATTTTCT  750

seq1  A-TTTCATTTTCTTGCTTAAATACATTTTTCCAAAAGAGGAAAACCATCA  799
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTTTCTTGCTTAAATACATTTTTCCAAAAGAGGAAAACCATCA  800

seq1  GAGTGTAAGGAAGTAGATGGGAAAATTTTCTATGGACAATATCATATTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTAAGGAAGTAGATGGGAAAATTTTCTATGGACAATATCATATTAA  850

seq1  AACCTTTAACATATCATAAAACTCTGAGTGTGTTTTTGTCTTGGGAAATC  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AACCTTTAACATATCATAGAACTCTGAGTGTGTTTTTGTCTTGGGAAATC  900

seq1  ACTTTTGCGTGTATTCTTCACAATATGAATTGTTTGGGGGTTGTATATCC  949
      |||||||||||||||||||||||||||| ||| |||||||||||||||||
seq2  ACTTTTGCGTGTATTCTTCACAATATGATTTG-TTGGGGGTTGTATATCC  949

seq1  AATCTGGAAGGCACACACTCACATCATGTTTTCAAACACAAATTGTTTAG  999
      |||||| ||||||||||||||||||||||||   ||||| ||||| ||||
seq2  AATCTGCAAGGCACACACTCACATCATGTTT--CAACAC-AATTG-TTAG  995

seq1  CTTAATCTTGCTAGCAACATAAGCCACGTGGAAAGGACAAATTTTTCTGC  1049
      | ||||| ||||||||||||||||||||| ||||||||||| ||||||||
seq2  C-TAATC-TGCTAGCAACATAAGCCACGT-GAAAGGACAAA-TTTTCTGC  1041

seq1  ATGTGCACATTCTTTTAACTGCTTTAATAGCAAATGATAGCACTGGATAT  1099
      ||||||||||  ||   |||||||  ||||| ||||| |||   ||||| 
seq2  ATGTGCACATCGTT---ACTGCTTGTATAGCCAATGA-AGCCTGGGATA-  1086

seq1  GCTTTTATTAATTTATGCATTTTCATACGTAGAAAGTCGGT  1140
      ||||||||||| ||||||| |||| ||||||||| ||||||
seq2  GCTTTTATTAA-TTATGCAATTTC-TACGTAGAAGGTCGGT  1125