BAC Information

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BAC

Clone NameB6Ng01-001F15
Chromosome15 (Build37)
Map Location 34,501,869 - 34,624,218
singlet/doubletdoublet
Overlap geneNpal2
Upstream genePgcp, Tspyl5, LOC675463, Mtdh, Laptm4b, Matn2, Rpl30, BC030476, Hrsp12, Pop1
Downstream geneKcns2, Stk3, Osr2, Vps13b, EG666183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001F15.bB6Ng01-001F15.g
ACCDH839699DH839700
length1,1631,092
definitionDH839699|Mus musculus domesticus DNA, BAC clone: B6Ng01-001F15, 5' end.DH839700|Mus musculus domesticus DNA, BAC clone: B6Ng01-001F15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,623,044 - 34,624,218)(34,501,869 - 34,502,981)
sequence
gaattccaaagcctagacagactagcatcacaaggagccagctggggaag
cagtgcctgagacctgtctgttattgttgttatctctgtagtccccatag
ctcacaaagcacccaccccacctcacattctaatgaacaaatactagaat
tgtgttcccaaagacgacgacgacgtgagctcaggagacatttctctcac
atttctttaacttcatataaatgcaaatgttctcacttagtgttggttta
ctctgtcccattgtcacactgtgcgccctggtgtatatcgctcatggaaa
ctgagtcactgtaccaaggagtttccaagtcaccaaggagttccaggcta
aatacagtgtgtgaatcgcaaataaatattactgattaagtagaatttcc
agtcagggaattattttgtttaaaatatgacaaaatacaactggggagaa
attagcatttattctcagatactgaatacaatctggttcttgtgttttga
attttacatgtcccgcattgaaggtgtggttagaatgaattgtgccaata
tgaggtaagctactccataatcaaggacaagtgtgaggtggagggcacgt
gcaggcagtgcacagagcataggcagtgcacacgggagagtttcaaaagg
aaggacatgattgctcaaggaaaagcacagccgacaggttctctgtgcag
gcaatgaaggctcatgactctaagagaaggttggtggactttttattatg
ttatagacagaagaatgtatgaataaatacaagactgagaatggtgtttt
tacaataaaaattagtcatagcttctctgaagccctgaaactattttcct
actttattgtctgatacagtttttttaaacagcagacttgttccaaaatg
atatttcaacagagtacaaattataccacttagaattttgatagcactgg
taaaaatttaaagttattataaaaatgagtgccttcaaggagggcagaaa
gtgcccagccaaaagcatcccaatactaagagactgagtatgactgctta
ctagcaactagttcagcgggtacatgtggggtgaggaaagaatgcttggc
tgaaagactgaaactgcttggtctcgttaatagagaatgggatacggcag
agattctgagacg
gaattcctcacacaaacatgctaggttcagttttgagctcttagcactac
aaaacgtgtggtgtttaatctagcaatcttactgaaagactatgaaacta
tgaaggacatgaagggaagataaatgtgtgctaagaaatgaaagaagtca
ggctcaaatgctttttattctatgatcccacttatatgtcattataaaag
ggacaacttttttatagtaaaaaggctggatttgggggaagtattgacag
gtgccagactcatacattaggtttgtagttgcttgttcacagatggccct
aattacaagcctcagagtttgcataaggcaaactggtatatttatatcct
ttatatcactatcaaattgtcatcccagaggcagccttcaaagtggctga
gtgtgtatcatcagtattgtggtgtgctgtgtgtctggagaccagagtgg
cctcaggagctcagctcaatatttcccttcctttcggctatgtccaccat
cacactccttcctttagagccaaacttagatgctgtcacatcactcttga
gtagcaatgaaattgtcctcatttacacaatctgcctctttttttttctt
tttccactacagaacagaaaccctagggctatatatgttattgttgttgt
gtgtttgtaatgaacacattctgaatctttgcttgaaaaaaaaacttact
ttattagttttcaagggattttttgtaacgaaagtattgtagcacagggt
aagcaagcatttaaactcagctgtcagacctgagagatctgtgtgttagt
caactgcatgagagatagctcccaaaattattatcaacgtggtgcatgag
actggagaaattcttccagcatgcttagtggtatctgtaaaagaaacact
gctttacaaagagacacagttggactctgagaataaactcaacaaataca
tttatttctcatatagcaaatgatcttaatgtaaatatcaagtatctgat
tgtcacaaccagaatcgtcatgtttactttagctttccagtgcccagaaa
aagaaatcatgcatagtgaggaaagagcttaaacagagcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_34623044_34624218
seq2: B6Ng01-001F15.b_43_1205 (reverse)

seq1  CGTCTCAGAATCTCTCTGTCCTACTCTCCCCATCTCTAATAACGAGACCA  50
      ||||||||||  |||||| | ||   ||||  |||||| |||||||||||
seq2  CGTCTCAGAA--TCTCTGCCGTA---TCCCATTCTCTATTAACGAGACCA  45

seq1  GACAGTTTCAGTCTCTCAGCCAAGCCATCTTTCCTCACCCCACATTGTTA  100
        |||||||||||| ||||||||||  ||||||||||||||||||   ||
seq2  AGCAGTTTCAGTCTTTCAGCCAAGCATTCTTTCCTCACCCCACAT--GTA  93

seq1  CCCGCTGAACCTAAGTTGCTAGTAAGCCAGTCATACTCAGTCTCTTAAGT  150
      ||||||||||   ||||||||||||| ||||||||||||||||||| |||
seq2  CCCGCTGAAC--TAGTTGCTAGTAAG-CAGTCATACTCAGTCTCTT-AGT  139

seq1  ATTGGGATGCTTTTGGCCTGGGCACTTTCTGCCCTCCCTGAAGGCACTCA  200
      |||||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  ATTGGGATGCTTTTGG-CTGGGCACTTTCTGCCCTCCTTGAAGGCACTCA  188

seq1  TTTTTATAATAACTTTAAATTTTTACCAGTGCTATCAAAATTCTAAGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATAATAACTTTAAATTTTTACCAGTGCTATCAAAATTCTAAGTGG  238

seq1  TATAATTTGTACTCTGTTGAAATATCATTTTGGAACAAGTCTGCTGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTGTACTCTGTTGAAATATCATTTTGGAACAAGTCTGCTGTTTA  288

seq1  AAAAAACTGTATCAGACAATAAAGTAGGAAAATAGTTTCAGGGCTTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTGTATCAGACAATAAAGTAGGAAAATAGTTTCAGGGCTTCAGA  338

seq1  GAAGCTATGACTAATTTTTATTGTAAAAACACCATTCTCAGTCTTGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTATGACTAATTTTTATTGTAAAAACACCATTCTCAGTCTTGTATT  388

seq1  TATTCATACATTCTTCTGTCTATAACATAATAAAAAGTCCACCAACCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATACATTCTTCTGTCTATAACATAATAAAAAGTCCACCAACCTTC  438

seq1  TCTTAGAGTCATGAGCCTTCATTGCCTGCACAGAGAACCTGTCGGCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAGTCATGAGCCTTCATTGCCTGCACAGAGAACCTGTCGGCTGTG  488

seq1  CTTTTCCTTGAGCAATCATGTCCTTCCTTTTGAAACTCTCCCGTGTGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTTGAGCAATCATGTCCTTCCTTTTGAAACTCTCCCGTGTGCAC  538

seq1  TGCCTATGCTCTGTGCACTGCCTGCACGTGCCCTCCACCTCACACTTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATGCTCTGTGCACTGCCTGCACGTGCCCTCCACCTCACACTTGTC  588

seq1  CTTGATTATGGAGTAGCTTACCTCATATTGGCACAATTCATTCTAACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTATGGAGTAGCTTACCTCATATTGGCACAATTCATTCTAACCAC  638

seq1  ACCTTCAATGCGGGACATGTAAAATTCAAAACACAAGAACCAGATTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAATGCGGGACATGTAAAATTCAAAACACAAGAACCAGATTGTAT  688

seq1  TCAGTATCTGAGAATAAATGCTAATTTCTCCCCAGTTGTATTTTGTCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATCTGAGAATAAATGCTAATTTCTCCCCAGTTGTATTTTGTCATA  738

seq1  TTTTAAACAAAATAATTCCCTGACTGGAAATTCTACTTAATCAGTAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACAAAATAATTCCCTGACTGGAAATTCTACTTAATCAGTAATAT  788

seq1  TTATTTGCGATTCACACACTGTATTTAGCCTGGAACTCCTTGGTGACTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGCGATTCACACACTGTATTTAGCCTGGAACTCCTTGGTGACTTG  838

seq1  GAAACTCCTTGGTACAGTGACTCAGTTTCCATGAGCGATATACACCAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCCTTGGTACAGTGACTCAGTTTCCATGAGCGATATACACCAGGG  888

seq1  CGCACAGTGTGACAATGGGACAGAGTAAACCAACACTAAGTGAGAACATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACAGTGTGACAATGGGACAGAGTAAACCAACACTAAGTGAGAACATT  938

seq1  TGCATTTATATGAAGTTAAAGAAATGTGAGAGAAATGTCTCCTGAGCTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTATATGAAGTTAAAGAAATGTGAGAGAAATGTCTCCTGAGCTCA  988

seq1  CGTCGTCGTCGTCTTTGGGAACACAATTCTAGTATTTGTTCATTAGAATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCGTCGTCGTCTTTGGGAACACAATTCTAGTATTTGTTCATTAGAATG  1038

seq1  TGAGGTGGGGTGGGTGCTTTGTGAGCTATGGGGACTACAGAGATAACAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGGGGTGGGTGCTTTGTGAGCTATGGGGACTACAGAGATAACAAC  1088

seq1  AATAACAGACAGGTCTCAGGCACTGCTTCCCCAGCTGGCTCCTTGTGATG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAGACAGGTCTCAGGCACTGCTTCCCCAGCTGGCTCCTTGTGATG  1138

seq1  CTAGTCTGTCTAGGCTTTGGAATTC  1175
      |||||||||||||||||||||||||
seq2  CTAGTCTGTCTAGGCTTTGGAATTC  1163

seq1: chr15_34501869_34502981
seq2: B6Ng01-001F15.g_67_1158

seq1  GAATTCCTCACACAAACATGCTAGGTTCAGTTTTGAGCTCTTAGCACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACACAAACATGCTAGGTTCAGTTTTGAGCTCTTAGCACTAC  50

seq1  AAAACGTGTGGTGTTTAATCTAGCAATCTTACTGAAAGACTATGAAACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGTGTGGTGTTTAATCTAGCAATCTTACTGAAAGACTATGAAACTA  100

seq1  TGAAGGACATGAAGGGAAGATAAATGTGTGCTAAGAAATGAAAGAAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGACATGAAGGGAAGATAAATGTGTGCTAAGAAATGAAAGAAGTCA  150

seq1  GGCTCAAATGCTTTTTATTCTATGATCCCACTTATATGTCATTATAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAAATGCTTTTTATTCTATGATCCCACTTATATGTCATTATAAAAG  200

seq1  GGACAACTTTTTTATAGTAAAAAGGCTGGATTTGGGGGAAGTATTGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACTTTTTTATAGTAAAAAGGCTGGATTTGGGGGAAGTATTGACAG  250

seq1  GTGCCAGACTCATACATTAGGTTTGTAGTTGCTTGTTCACAGATGGCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGACTCATACATTAGGTTTGTAGTTGCTTGTTCACAGATGGCCCT  300

seq1  AATTACAAGCCTCAGAGTTTGCATAAGGCAAACTGGTATATTTATATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAAGCCTCAGAGTTTGCATAAGGCAAACTGGTATATTTATATCCT  350

seq1  TTATATCACTATCAAATTGTCATCCCAGAGGCAGCCTTCAAAGTGGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCACTATCAAATTGTCATCCCAGAGGCAGCCTTCAAAGTGGCTGA  400

seq1  GTGTGTATCATCAGTATTGTGGTGTGCTGTGTGTCTGGAGACCAGAGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATCATCAGTATTGTGGTGTGCTGTGTGTCTGGAGACCAGAGTGG  450

seq1  CCTCAGGAGCTCAGCTCAATATTTCCCTTCCTTTCGGCTATGTCCACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGAGCTCAGCTCAATATTTCCCTTCCTTTCGGCTATGTCCACCAT  500

seq1  CACACTCCTTCCTTTAGAGCCAAACTTAGATGCTGTCACATCACTCTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCCTTCCTTTAGAGCCAAACTTAGATGCTGTCACATCACTCTTGA  550

seq1  GTAGCAATGAAATTGTCCTCATTTACACAATCTGCCTCTTTTTTTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAATGAAATTGTCCTCATTTACACAATCTGCCTCTTTTTTTTTCTT  600

seq1  TTTCCACTACAGAACAGAAACCCTAGGGCTATATATGTTATTGTTGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACTACAGAACAGAAACCCTAGGGCTATATATGTTATTGTTGTTGT  650

seq1  GTGTTTGTAATGAACACATTCTGAATCTTTGCTTGAAAAAAAAACTTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTAATGAACACATTCTGAATCTTTGCTTGAAAAAAAAACTTACT  700

seq1  TTATTAGTTTTCAAGGGATTTTTTGTAACGAAAGTATTGTAGCACAGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGTTTTCAAGGGATTTTTTGTAACGAAAGTATTGTAGCACAGGGT  750

seq1  AAGCAAGCATTTAAACTCAGCTGTCAGACCTGAGAGATCTGTGTGTTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGCATTTAAACTCAGCTGTCAGACCTGAGAGATCTGTGTGTTAGT  800

seq1  CAACTGCATGAGAGATAGCTCCCAAAATTATTATCAACGTGGTGCATGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCATGAGAGATAGCTCCCAAAATTATTATCAACGTGGTGCATGAG  850

seq1  ACTGGAGAAATTCTTCCAGCATGCTTAGTGGTATCTGTAAAAGAAACACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGAAATTCTTCCAGCATGCTTAGTGGTATCTGTAAAAGAAACACT  900

seq1  GCTTTACAAAGAGACACAGTTGGACTCTGAGAATAAACTCAAAACAAATA  950
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  GCTTTACAAAGAGACACAGTTGGACTCTGAGAATAAACTC--AACAAATA  948

seq1  CATTTATTTCTCATATAAGCAAAATGATCTTAATGTAAATATCAAGTATC  1000
      |||||||||||||||| ||| |||||||||||||||||||||||||||||
seq2  CATTTATTTCTCATAT-AGC-AAATGATCTTAATGTAAATATCAAGTATC  996

seq1  TGATTTGTCACAAACCAAGAATCGTCAATGTTTTACTTTTTAGCTATCCA  1050
      ||| |||||||||  | ||||||||| ||| |||||  ||||||| ||||
seq2  TGA-TTGTCACAA--CCAGAATCGTC-ATG-TTTAC--TTTAGCTTTCCA  1039

seq1  GTGCCCAAGAAAAAAGAAAAATCAGTTGCATAGTGAAGTGAAAAGAGCTT  1100
      |||||| ||||||   | ||||||  ||||||||||   | |||||||||
seq2  GTGCCC-AGAAAA---AGAAATCA--TGCATAGTGA---GGAAAGAGCTT  1080

seq1  AGACCAGAGCTTG  1113
      | | |||||||||
seq2  A-AACAGAGCTTG  1092