BAC Information

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BAC

Clone NameB6Ng01-003D05
Chromosome15 (Build37)
Map Location 100,072,112 - 100,200,599
singlet/doubletdoublet
Overlap geneAtf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4
Upstream geneKcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b
Downstream geneSlc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003D05.bB6Ng01-003D05.g
ACCDH840986DH840987
length1,1081,054
definitionDH840986|Mus musculus domesticus DNA, BAC clone: B6Ng01-003D05, 5' end.DH840987|Mus musculus domesticus DNA, BAC clone: B6Ng01-003D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,199,486 - 100,200,599)(100,072,112 - 100,073,170)
sequence
gaattcagtggctctcaaaacaaaataagggaggtaaagagacggctaag
caggtaccagcacctgcccagcctgagttcagaccctcagagacacatgg
tggaaggagagacctgactccttaaagcagccctctgaccactacccacg
tgctgttgcatgtgtgtgcctacacgtgtaacacacacctgaacacacac
acacacagccacagctgagttgcatcaccagggctcagatggaagcagag
aatgagttcttggggcctgtgtctgaccttcccacacatgcagtgctatc
aacgtacctacactcaataatttaacaatagcaaatgttgttttataaac
tacagcaacagtcatgaatgtgggaagaggacattgtgggagagagaggg
taatgaatggaaaaagatcagaaggagtgtagtcatcagaatgtactttg
tacatttatgaacaacctgacaaagaacagactcaatataagttattaga
aatagaactcttaaaaaaaaaaaaagcagcactgggaactgcggggagct
ggaaagaaggctccagggttgcgagcactcactggtcttgcagaggactt
gggttcagttcccagcacccacatgatggctcaaccctgtaactccagtt
ccagaggacctaatacccttttgtgacctccaagggcaccacagacatgg
tgcacatacatacatatatacatacattcatacacacagaaaatgcccat
ttcatataaaatttaaaagtacacctaaaaatatgtaagtaaaaatcttt
tttttaaaaacagtgttgtcctcctttggggttctccaatcgtcttcaga
ttgacgtgtccctccatcagcagccacagagtctggagtaccatagctaa
gggacatagtgactcctcccaccttatcttaacaggaaaacagccagagc
agacactgtgcacttgtctgtctcagcacttgggaggttgaagctagggg
aatcaggagttagagggcagcttgagcaagacagaactacttcaaatggc
aaacaacagtctcaaggttagcattggcctaccaggatcgggctctagac
tggtctgg
gaattcctgatccactgcagtgccattagaagacattgtatgtgggcaga
cagtttatgctttagaaggttgagaaataaaaaggttttgtaggcaggat
gtcactgtgcagctcaggctgcccttggaccggaaatcgtgtgcaattct
gctaggtttggggattacaggcctatgccatcatgcctggccagaaaaga
aatgtacggaaagacctctttatctcagtggtacttgcatgaaagagccc
tgagtcttagcagcataggaaggtcggtacctcccttccgatgcagggct
atctctgaagttcagactgtgcctacctccctcttaccagtagagagctc
tcttctctgctttcccagttttaccttctggatgcaaggctggcaggtga
gctgctgtgtcagggtgttgcagcctctcttctttctgagcacacggtga
ctgccagtgctgtcagaggagtgtttttgttctatgtgttttgaaccaga
ggctggctgtgtagctgagatgagttgaagctcttcctgctgagtgacac
aaggctgagggcagctgtgttctgtgtgagactggtggtacctgcatata
tattttaagatttcttctcctaccgggcagtggtggcacacgcctttaat
cccagcatttgggaagcagaggcaggcaaatttctgagtttgaggccagc
ctggtgtacagcatgagttccaggacggctagggctacacagagaaaccc
tgtctcaaaaaaccaaaaaaaaaattttttttcctcctgtttgtgtcata
aggagaaatatttagtgtcttaactttagaaattattttcttacgagttt
agtgagagaatctgaagaaaacctagaaagggacagactgtatctgaggt
aggattagaacagatcataaggactggctcagagcttttaatcccagcac
tccgggagcagaggcaggtagatctctgtagttcgagaccaagctggtct
atgtatggagttccaagacagccaggctatataggatacctgtgtgggga
ggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100199486_100200599
seq2: B6Ng01-003D05.b_48_1155 (reverse)

seq1  CCAGACCAGTCTAGAGACCCGGCTCATGGTAGGCAAATGCTAACCCTGAG  50
      ||||||||||||||||  || | || |||||||| |||||||||| ||||
seq2  CCAGACCAGTCTAGAG--CCCGATCCTGGTAGGCCAATGCTAACCTTGAG  48

seq1  ACTTGTTG-TTGCCTTTTGAAGTAGTCTCTGTCTTGCTCAAGCTGACCTC  99
      || ||||| ||||| ||||||||||| |||||||||||||||||| ||||
seq2  AC-TGTTGTTTGCCATTTGAAGTAGT-TCTGTCTTGCTCAAGCTGCCCTC  96

seq1  TAACTCCTTGATCCCCTTGCTTCAACCTCCCAAGTGCTGGAAGACAGGCA  149
      ||||||||   |||||| |||||||||||||||||||||  |||||| ||
seq2  TAACTCCTGATTCCCCTAGCTTCAACCTCCCAAGTGCTG--AGACAGACA  144

seq1  AGTGCACAGTGTTCTGCTCTGGCTGTTTTTCCTGTTTAAGATAAGGTGGG  199
      ||||||||||| ||||||||||||| |||||||| |||||||||||||||
seq2  AGTGCACAGTG-TCTGCTCTGGCTG-TTTTCCTG-TTAAGATAAGGTGGG  191

seq1  AGGAGTCACTATGTCCCTTAGCTATGGTACTCCAGACTCTGTGGCTGCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCACTATGTCCCTTAGCTATGGTACTCCAGACTCTGTGGCTGCTG  241

seq1  ATGGAGGGACACGTCAATCTGGAAGACGATTGGAGAACCCCAAAGGAGGA  299
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGGAGGGACACGTCAATCT-GAAGACGATTGGAGAACCCCAAAGGAGGA  290

seq1  CAACACTGTTTTT-AAAAAAAGATTTTTACTTACATATTTTTAGGTGTAC  348
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAACACTGTTTTTAAAAAAAAGATTTTTACTTACATATTTTTAGGTGTAC  340

seq1  TTTTAAATTTTATATG-AATGGGCA-TTTCTGTGTGTATGAATGTATGTA  396
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  TTTTAAATTTTATATGAAATGGGCATTTTCTGTGTGTATGAATGTATGTA  390

seq1  TATATGTATGTATGTGCACCATGTCTGTGGTGCCCTTGGAGGTCACAAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATGTATGTGCACCATGTCTGTGGTGCCCTTGGAGGTCACAAAA  440

seq1  GGGTATTAGGTCCTCTGGAACTGGAGTTACAGGGTTGAGCCATCATGTGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTAGGTCCTCTGGAACTGGAGTTACAGGGTTGAGCCATCATGTGG  490

seq1  GTGCTGGGAACTGAACCCAAGTCCTCTGCAAGACCAGTGAGTGCTCGCAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGAACTGAACCCAAGTCCTCTGCAAGACCAGTGAGTGCTCGCAA  540

seq1  CCCTGGAGCCTTCTTTCCAGCTCCCCGCAGTTCCCAGTGCTGCTTTTTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGCCTTCTTTCCAGCTCCCCGCAGTTCCCAGTGCTGCTTTTTTT  590

seq1  TTTTTTAAGAGTTCTATTTCTAATAACTTATATTGAGTCTGTTCTTTGTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAGAGTTCTATTTCTAATAACTTATATTGAGTCTGTTCTTTGTC  640

seq1  AGGTTGTTCATAAATGTACAAAGTACATTCTGATGACTACACTCCTTCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTTCATAAATGTACAAAGTACATTCTGATGACTACACTCCTTCTG  690

seq1  ATCTTTTTCCATTCATTACCCTCTCTCTCCCACAATGTCCTCTTCCCACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTCCATTCATTACCCTCTCTCTCCCACAATGTCCTCTTCCCACA  740

seq1  TTCATGACTGTTGCTGTAGTTTATAAAACAACATTTGCTATTGTTAAATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGACTGTTGCTGTAGTTTATAAAACAACATTTGCTATTGTTAAATT  790

seq1  ATTGAGTGTAGGTACGTTGATAGCACTGCATGTGTGGGAAGGTCAGACAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTGTAGGTACGTTGATAGCACTGCATGTGTGGGAAGGTCAGACAC  840

seq1  AGGCCCCAAGAACTCATTCTCTGCTTCCATCTGAGCCCTGGTGATGCAAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCAAGAACTCATTCTCTGCTTCCATCTGAGCCCTGGTGATGCAAC  890

seq1  TCAGCTGTGGCTGTGTGTGTGTGTGTTCAGGTGTGTGTTACACGTGTAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTGGCTGTGTGTGTGTGTGTTCAGGTGTGTGTTACACGTGTAGG  940

seq1  CACACACATGCAACAGCACGTGGGTAGTGGTCAGAGGGCTGCTTTAAGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATGCAACAGCACGTGGGTAGTGGTCAGAGGGCTGCTTTAAGGA  990

seq1  GTCAGGTCTCTCCTTCCACCATGTGTCTCTGAGGGTCTGAACTCAGGCTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTCTCTCCTTCCACCATGTGTCTCTGAGGGTCTGAACTCAGGCTG  1040

seq1  GGCAGGTGCTGGTACCTGCTTAGCCGTCTCTTTACCTCCCTTATTTTGTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGCTGGTACCTGCTTAGCCGTCTCTTTACCTCCCTTATTTTGTT  1090

seq1  TTGAGAGCCACTGAATTC  1114
      ||||||||||||||||||
seq2  TTGAGAGCCACTGAATTC  1108

seq1: chr15_100072112_100073170
seq2: B6Ng01-003D05.g_68_1121

seq1  GAATTCCTGATCCACTGCAGTGCCATTAGAAGACATTGTATGTGGGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCCACTGCAGTGCCATTAGAAGACATTGTATGTGGGCAGA  50

seq1  CAGTTTATGCTTTAGAAGGTTGAGAAATAAAAAGGTTTTGTAGGCAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTATGCTTTAGAAGGTTGAGAAATAAAAAGGTTTTGTAGGCAGGAT  100

seq1  GTCACTGTGCAGCTCAGGCTGCCCTTGGACCGGAAATCGTGTGCAATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGTGCAGCTCAGGCTGCCCTTGGACCGGAAATCGTGTGCAATTCT  150

seq1  GCTAGGTTTGGGGATTACAGGCCTATGCCATCATGCCTGGCCAGAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGTTTGGGGATTACAGGCCTATGCCATCATGCCTGGCCAGAAAAGA  200

seq1  AATGTACGGAAAGACCTCTTTATCTCAGTGGTACTTGCATGAAAGAGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACGGAAAGACCTCTTTATCTCAGTGGTACTTGCATGAAAGAGCCC  250

seq1  TGAGTCTTAGCAGCATAGGAAGGTCGGTACCTCCCTTCCGATGCAGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTTAGCAGCATAGGAAGGTCGGTACCTCCCTTCCGATGCAGGGCT  300

seq1  ATCTCTGAAGTTCAGACTGTGCCTACCTCCCTCTTACCAGTAGAGAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGAAGTTCAGACTGTGCCTACCTCCCTCTTACCAGTAGAGAGCTC  350

seq1  TCTTCTCTGCTTTCCCAGTTTTACCTTCTGGATGCAAGGCTGGCAGGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTGCTTTCCCAGTTTTACCTTCTGGATGCAAGGCTGGCAGGTGA  400

seq1  GCTGCTGTGTCAGGGTGTTGCAGCCTCTCTTCTTTCTGAGCACACGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTGTCAGGGTGTTGCAGCCTCTCTTCTTTCTGAGCACACGGTGA  450

seq1  CTGCCAGTGCTGTCAGAGGAGTGTTTTTGTTCTATGTGTTTTGAACCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGTGCTGTCAGAGGAGTGTTTTTGTTCTATGTGTTTTGAACCAGA  500

seq1  GGCTGGCTGTGTAGCTGAGATGAGTTGAAGCTCTTCCTGCTGAGTGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTGTGTAGCTGAGATGAGTTGAAGCTCTTCCTGCTGAGTGACAC  550

seq1  AAGGCTGAGGGCAGCTGTGTTCTGTGTGAGACTGGTGGTACCTGCATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGAGGGCAGCTGTGTTCTGTGTGAGACTGGTGGTACCTGCATATA  600

seq1  TATTTTAAGATTTCTTCTCCTACCGGGCAGTGGTGGCACACGCCTTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAGATTTCTTCTCCTACCGGGCAGTGGTGGCACACGCCTTTAAT  650

seq1  CCCAGCATTTGGGAAGCAGAGGCAGGCAAATTTCTGAGTTTGAGGCCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCATTTGGGAAGCAGAGGCAGGCAAATTTCTGAGTTTGAGGCCAGC  700

seq1  CTGGTGTACAGCATGAGTTCCAGGACGGCTAGGGCTACACAGAGAAACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTACAGCATGAGTTCCAGGACGGCTAGGGCTACACAGAGAAACCC  750

seq1  TGTCTCAAAAAACCAAAAAAAAAATTTTTTTTCCTCCTGTTTGTGTCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAAAAACCAAAAAAAAAATTTTTTTTCCTCCTGTTTGTGTCATA  800

seq1  AGGAGAAATATTTAGTGTCTTAACTTTAGAAATTATTTTCTTACGAGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAATATTTAGTGTCTTAACTTTAGAAATTATTTTCTTACGAGTTT  850

seq1  AGTGAGAGAACCTGAAGAAAACCTAGAAAGGGACAGACTGTAGCTGAAGG  900
      |||||||||| ||||||||||||||||||||||||||||||| ||| |||
seq2  AGTGAGAGAATCTGAAGAAAACCTAGAAAGGGACAGACTGTATCTG-AGG  899

seq1  TAGGATTAGAAACAGAACATAAGGACTGGCTCAGTAGCCTTTAATCCCAG  950
      ||||||||| |||||| ||||||||||||||||| ||| |||||||||||
seq2  TAGGATTAG-AACAGATCATAAGGACTGGCTCAG-AGCTTTTAATCCCAG  947

seq1  CACTCCGGAAGCAGAGGCAGGTAGATCTCTGTAGTTCGAGACCAAGCTGG  1000
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCGGGAGCAGAGGCAGGTAGATCTCTGTAGTTCGAGACCAAGCTGG  997

seq1  TCTATGTAGTGAGTTCCAAGACAGCCAGGCTACATAGTGATACCCTGTGG  1050
      ||||||||  |||||||||||||||||||||| |||| |||| |||||| 
seq2  TCTATGTATGGAGTTCCAAGACAGCCAGGCTATATAG-GATA-CCTGTGT  1045

seq1  TGGGAGGTA  1059
       ||||||||
seq2  GGGGAGGTA  1054