BAC Information

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BAC

Clone NameB6Ng01-004A15
Chromosome15 (Build37)
Map Location 39,939,428 - 40,126,166
singlet/doubletdoublet
Overlap geneLOC670013
Upstream geneSlc25a32, Wdsof1, LOC671215, Rims2, Tm7sf4, Dpys, Lrp12, LOC100039130
Downstream geneLOC664872, Zfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004A15.bB6Ng01-004A15.g
ACCDH841560DH841561
length4041,136
definitionDH841560|Mus musculus domesticus DNA, BAC clone: B6Ng01-004A15, 5' end.DH841561|Mus musculus domesticus DNA, BAC clone: B6Ng01-004A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,939,428 - 39,939,831)(40,125,013 - 40,126,166)
sequence
gaattcttcaagtctcctattgctaaaccttgtctcctcaggaaaactgc
atcatgagtcaaacaatctctaccccagaggttagagaggctcatgtctg
gcttaagagaagttatgaaagaaaatactggtctattaaaagattattaa
agcatattgtactatgtattgagtcctgatgtcctagcaaccccaagagg
gccaccaacaaagtccacaggtatcatggaggtcttcctggaggataaag
cctgaacttggtactgtgtttccctcccctacttccttccttctttcctt
ctttccttctttccttctttccttctttccttctttccttctttccttct
ttccttctttccttctttccttctttccttccttccttccttccttcctt
cctt
gaattcttattattttaaacatcattcattcatttattcattcattcagt
ttatgttcttgcacatgggcagagggttggggacatgctgtgctacactg
agcatgtggaaatcaaacaacttgtggagttagttctctctttctatcac
gtgagttccagggaaagaactcaggccttcaggcatatcagcaatcagct
ctctgtgctcagtcatcttgccagaccagaatttttagttgtatgggaaa
actccagacagaaatagcatttatctccaagaaatatttgttttaataaa
aaaaaattactatagtacctattactgtatctttttaatcatcacataag
gtatgtcataggagactactgttactcataacatatactctaaataatcc
ctgagaactataaaaccattacttcaattttcgaataaacatttaatgac
atacatttagaatgattgattctccaacacccttcttcagattctccttc
ttcacagtattctcctcttctttatagttttttaatatgtagctgtctgc
cagcgaagcgtgccacagtcaatgaaattactttcaagtataaaataaca
gtgtgttttgaaattttaatttattttctttacggaaagcaaatttccaa
atgttgagatgtgttattaaaattcgaaaggactggtactgaagtgatag
tgtctcaaatggcaatttcagttacgaatgacataaaactgatttggagg
gacctgtttgtatcctgagtgagatcttttttttacttcgaatctataat
aaaaggaaaataaaatagaatgcaaaaagaaaacaatgccaacattttag
cataaatgtgaaacacaccggggtttggataggagacagtacaaatttgg
ctcatactagtttacattttacaaactcaaatcactttgattcatatatc
tgctatcactattggcataaaatatgtctatcacacagactgctagtgtt
taagtgccaaagtggtctgagtatttaactcctcacaacttcctaccaga
ctatgtgaggcatgctcaacgtttttctgctgttgggacttacgaaaaga
gagattgccaacaaacaacagtttttgcttgattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_39939428_39939831
seq2: B6Ng01-004A15.b_47_450

seq1  GAATTCTTCAAGTCTCCTATTGCTAAACCTTGTCTCCTCAGGAAAACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAAGTCTCCTATTGCTAAACCTTGTCTCCTCAGGAAAACTGC  50

seq1  ATCATGAGTCAAACAATCTCTACCCCAGAGGTTAGAGAGGCTCATGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAGTCAAACAATCTCTACCCCAGAGGTTAGAGAGGCTCATGTCTG  100

seq1  GCTTAAGAGAAGTTATGAAAGAAAATACTGGTCTATTAAAAGATTATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGAGAAGTTATGAAAGAAAATACTGGTCTATTAAAAGATTATTAA  150

seq1  AGCATATTGTACTATGTATTGAGTCCTGATGTCCTAGCAACCCCAAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATTGTACTATGTATTGAGTCCTGATGTCCTAGCAACCCCAAGAGG  200

seq1  GCCACCAACAAAGTCCACAGGTATCATGGAGGTCTTCCTGGAGGATAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCAACAAAGTCCACAGGTATCATGGAGGTCTTCCTGGAGGATAAAG  250

seq1  CCTGAACTTGGTACTGTGTTTCCCTCCCCTACTTCCTTCCTTCTTTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACTTGGTACTGTGTTTCCCTCCCCTACTTCCTTCCTTCTTTCCTT  300

seq1  CTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCT  350

seq1  TTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCCTTCCTTCCTTCCTTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTTTCCTTCTTTCCTTCTTTCCTTCCTTCCTTCCTTCCTTCCTT  400

seq1  CCTT  404
      ||||
seq2  CCTT  404

seq1: chr15_40125013_40126166
seq2: B6Ng01-004A15.g_66_1201 (reverse)

seq1  TTAATCTATGCAAAAACTGTATGTTTGTT-GCATTCTTCTCTTTTCTGTA  49
      |||||| | ||||||||||| |||||||| ||| || ||||||||| |||
seq2  TTAATC-AAGCAAAAACTGT-TGTTTGTTGGCAATC-TCTCTTTTC-GTA  46

seq1  AGTCCCAACAGCAGAAGAGCGGTGGGAGGCATGCCCTTCACAATAGTCTT  99
      |||||||||||||||| | || ||    |||||||  |||| ||||||| 
seq2  AGTCCCAACAGCAGAAAAACGTTG---AGCATGCC--TCAC-ATAGTCTG  90

seq1  GTTGAGAAGTTTGTGAGAGTTTACATACTCAGACCACTTTGGCACTTTAA  149
      || | |||| |||||||   ||| |||||||||||||||||||||||  |
seq2  GTAG-GAAG-TTGTGAGGAGTTAAATACTCAGACCACTTTGGCACTT--A  136

seq1  AACACTAGCAGTCTGTGTGATAGACATTATTTTATGCCAATAGTTGATAG  199
      |||||||||||||||||||||||||| |||||||||||||||| ||||||
seq2  AACACTAGCAGTCTGTGTGATAGACA-TATTTTATGCCAATAG-TGATAG  184

seq1  CAGATATATTGAATCAAAGTGATTTGAGTTTGTAAAATTGTAAACTAGTA  249
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  CAGATATA-TGAATCAAAGTGATTTGAGTTTGTAAAA-TGTAAACTAGTA  232

seq1  TGAGCCAAATTTGTACTGTCTCCTATCCAAACCCCGGTGTGTTTCACATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAAATTTGTACTGTCTCCTATCCAAACCCCGGTGTGTTTCACATT  282

seq1  TATGCTAAAATGTTGGCATTGTTTTCTTTTTGCATTCTATTTTATTTTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTAAAATGTTGGCATTGTTTTCTTTTTGCATTCTATTTTATTTTCC  332

seq1  TTTTATTATAGATTCGAAGTAAAAAAAAAGATCTCACTCAGGATACAAAC  399
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTTATTATAGATTCGAAGT-AAAAAAAAGATCTCACTCAGGATACAAAC  381

seq1  AGGTCCCTCCAAATCAGTTTTATGTCATTCGTAACTGAAATTGCCATTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCTCCAAATCAGTTTTATGTCATTCGTAACTGAAATTGCCATTTG  431

seq1  AGACACTATCACTTCAGTACCAGTCCTTTCGAATTTTAATAACACATCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTATCACTTCAGTACCAGTCCTTTCGAATTTTAATAACACATCTC  481

seq1  AACATTTGGAAATTTGCTTTCCGTAAAGAAAATAAATTAAAATTTCAAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGGAAATTTGCTTTCCGTAAAGAAAATAAATTAAAATTTCAAAA  531

seq1  CACACTGTTATTTTATACTTGAAAGTAATTTCATTGACTGTGGCACGCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGTTATTTTATACTTGAAAGTAATTTCATTGACTGTGGCACGCTT  581

seq1  CGCTGGCAGACAGCTACATATTAAAAAACTATAAAGAAGAGGAGAATACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGGCAGACAGCTACATATTAAAAAACTATAAAGAAGAGGAGAATACT  631

seq1  GTGAAGAAGGAGAATCTGAAGAAGGGTGTTGGAGAATCAATCATTCTAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAAGGAGAATCTGAAGAAGGGTGTTGGAGAATCAATCATTCTAAA  681

seq1  TGTATGTCATTAAATGTTTATTCGAAAATTGAAGTAATGGTTTTATAGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTCATTAAATGTTTATTCGAAAATTGAAGTAATGGTTTTATAGTT  731

seq1  CTCAGGGATTATTTAGAGTATATGTTATGAGTAACAGTAGTCTCCTATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGATTATTTAGAGTATATGTTATGAGTAACAGTAGTCTCCTATGA  781

seq1  CATACCTTATGTGATGATTAAAAAGATACAGTAATAGGTACTATAGTAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTTATGTGATGATTAAAAAGATACAGTAATAGGTACTATAGTAAT  831

seq1  TTTTTTTTATTAAAACAAATATTTCTTGGAGATAAATGCTATTTCTGTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTATTAAAACAAATATTTCTTGGAGATAAATGCTATTTCTGTCT  881

seq1  GGAGTTTTCCCATACAACTAAAAATTCTGGTCTGGCAAGATGACTGAGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTTCCCATACAACTAAAAATTCTGGTCTGGCAAGATGACTGAGCA  931

seq1  CAGAGAGCTGATTGCTGATATGCCTGAAGGCCTGAGTTCTTTCCCTGGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGCTGATTGCTGATATGCCTGAAGGCCTGAGTTCTTTCCCTGGAA  981

seq1  CTCACGTGATAGAAAGAGAGAACTAACTCCACAAGTTGTTTGATTTCCAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGTGATAGAAAGAGAGAACTAACTCCACAAGTTGTTTGATTTCCAC  1031

seq1  ATGCTCAGTGTAGCACAGCATGTCCCCAACCCTCTGCCCATGTGCAAGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCAGTGTAGCACAGCATGTCCCCAACCCTCTGCCCATGTGCAAGAA  1081

seq1  CATAAACTGAATGAATGAATAAATGAATGAATGATGTTTAAAATAATAAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACTGAATGAATGAATAAATGAATGAATGATGTTTAAAATAATAAG  1131

seq1  AATTC  1154
      |||||
seq2  AATTC  1136