BAC Information

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BAC

Clone NameB6Ng01-004M16
Chromosome15 (Build37)
Map Location 39,943,384 - 39,962,459
singlet/doubletdoublet
Overlap geneLOC670013
Upstream geneSlc25a32, Wdsof1, LOC671215, Rims2, Tm7sf4, Dpys, Lrp12, LOC100039130
Downstream geneLOC664872, Zfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004M16.bB6Ng01-004M16.g
ACCDH842106DH842107
length8451,211
definitionDH842106|Mus musculus domesticus DNA, BAC clone: B6Ng01-004M16, 5' end.DH842107|Mus musculus domesticus DNA, BAC clone: B6Ng01-004M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,961,615 - 39,962,459)(39,943,384 - 39,944,593)
sequence
gaattctgagtacgagagggagtaacactttggaggaggggcgaggtaag
gactgatagacagggccgcctttcgctgttctcacccggaaagtcctgac
gcacatccctcatattcttcaaaagatgacagggaagctgaacctcaaca
tcagaggctacgtcaagatcacccttataaggatccattttcccatcctt
tcacaattctgccccactctatgattccagggtaatttcccctaataaac
acagagtactgcccagtgtctgctttgcaaaaacaatcatatgcttgtca
gggaagttactgttgacgataaagaaaccaaatagaagggggaccatgcc
ggagtcactgtgctccattcctgtatcagaacctgcatgcacacgcacac
acacacacacacacacacacacacacgcacacacgcgcacgcacgcgcac
gcacgcgcacgcacaggtacacaccatctctagactgctgtggtcacata
tgtgagaggaaatcatggattcaagactgaaagctgccctcctgctccta
cctgttctaagaggctctagactgcaggcgattcacagcttcccatgcac
attaggctattatatttcaagccagatatgaacagaatggacagtgtcca
ttaacttccttctctgctgcctgcactgacattagtatcggtttacagaa
cacaagttttgacagcaaatgggtctgattttgagcccagtgtccccatt
attggcaataaagcctcaggcaaattctttataattttctttcggttccc
ttgcatatgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattctatttcctcactgaattagaaatacaagttcaagttcctgacag
aatccatttcttgttggaccgctctttctggcatagcaatgtgcggagat
agaggtgcctggtactttaccatctcttatgtgcataccggatcacagga
aggcccacacttagacattcaacttaaactttatagaccctgtagatcct
gcctctaaatcacacagatgcttcagcacacacatttaaggagacacaat
tagatccaccacaccatgttcacatgttagttcatatttggggactgtgg
tccagcttgcacagaatgtcagatattgaatttcctctctattgaatttc
gccttggcttcaatcttggcaacaacttggtaatgcgagctgacatttcg
aacaaaccgtcttttgaatctcaggcttagattatttcattccttgcccg
tggttatgttcactagcaaataaacagcagcagtattttctcattgggcg
tccagtgctatttcttgtacaccgcagcgcgccacagagtgttcttattc
tgctgcttctgctaacgagaaggaaatgcagtgtggatggcagatgtctg
aacacttggatgattgagcatggccatctcctttggtccaaggcaaacat
tcatcttggaatgaacctgacagataaccccactaagataaacccactga
ctaaccttaggggacatttctgctacttgtcgatgatcacctaaatttgt
ccctcacattttattttagaatctgaggaccttggaaaagtttgagggtc
cttttgctgctctgtccctgagcttgaaacatagtgactgaggctgtcag
tcaggcctgtggaggctctgtgaggaggcagcccctgtacagcaatttca
cactggatacagtgtagacaacaaatggcaggccagggaagacagaggag
aagaaatgaaagccagtctttgaagctgcctggagtatacagatgtcaca
cgagaagaaatcagatgtagagaagaaagccctgcaatatccctaataag
gcaaacccacgaaacagactgaagcaagggtggagtaaggagacggggtc
agtctattgaatgctaggagaacattttgctagaatacaaaaagcacatt
ataaccacgaactggaatgtccaattgtattgttggtgaatacataacct
aatatctctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_39961615_39962459
seq2: B6Ng01-004M16.b_47_891 (reverse)

seq1  CACACACACACACACACACACACACACACACAAACACATATGCAAGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACAAACACATATGCAAGGGAA  50

seq1  CCGAAAGAAAATTATAAAGAATTTGCCTGAGGCTTTATTGCCAATAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAAGAAAATTATAAAGAATTTGCCTGAGGCTTTATTGCCAATAATGG  100

seq1  GGACACTGGGCTCAAAATCAGACCCATTTGCTGTCAAAACTTGTGTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTGGGCTCAAAATCAGACCCATTTGCTGTCAAAACTTGTGTTCTG  150

seq1  TAAACCGATACTAATGTCAGTGCAGGCAGCAGAGAAGGAAGTTAATGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCGATACTAATGTCAGTGCAGGCAGCAGAGAAGGAAGTTAATGGAC  200

seq1  ACTGTCCATTCTGTTCATATCTGGCTTGAAATATAATAGCCTAATGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCATTCTGTTCATATCTGGCTTGAAATATAATAGCCTAATGTGCA  250

seq1  TGGGAAGCTGTGAATCGCCTGCAGTCTAGAGCCTCTTAGAACAGGTAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGCTGTGAATCGCCTGCAGTCTAGAGCCTCTTAGAACAGGTAGGA  300

seq1  GCAGGAGGGCAGCTTTCAGTCTTGAATCCATGATTTCCTCTCACATATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGGCAGCTTTCAGTCTTGAATCCATGATTTCCTCTCACATATGT  350

seq1  GACCACAGCAGTCTAGAGATGGTGTGTACCTGTGCGTGCGCGTGCGTGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAGCAGTCTAGAGATGGTGTGTACCTGTGCGTGCGCGTGCGTGCG  400

seq1  CGTGCGTGCGCGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCGTGCGCGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  450

seq1  CGTGTGCATGCAGGTTCTGATACAGGAATGGAGCACAGTGACTCCGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGCATGCAGGTTCTGATACAGGAATGGAGCACAGTGACTCCGGCAT  500

seq1  GGTCCCCCTTCTATTTGGTTTCTTTATCGTCAACAGTAACTTCCCTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCCTTCTATTTGGTTTCTTTATCGTCAACAGTAACTTCCCTGACA  550

seq1  AGCATATGATTGTTTTTGCAAAGCAGACACTGGGCAGTACTCTGTGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATGATTGTTTTTGCAAAGCAGACACTGGGCAGTACTCTGTGTTTA  600

seq1  TTAGGGGAAATTACCCTGGAATCATAGAGTGGGGCAGAATTGTGAAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGAAATTACCCTGGAATCATAGAGTGGGGCAGAATTGTGAAAGGA  650

seq1  TGGGAAAATGGATCCTTATAAGGGTGATCTTGACGTAGCCTCTGATGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAATGGATCCTTATAAGGGTGATCTTGACGTAGCCTCTGATGTTG  700

seq1  AGGTTCAGCTTCCCTGTCATCTTTTGAAGAATATGAGGGATGTGCGTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCAGCTTCCCTGTCATCTTTTGAAGAATATGAGGGATGTGCGTCAG  750

seq1  GACTTTCCGGGTGAGAACAGCGAAAGGCGGCCCTGTCTATCAGTCCTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCCGGGTGAGAACAGCGAAAGGCGGCCCTGTCTATCAGTCCTTAC  800

seq1  CTCGCCCCTCCTCCAAAGTGTTACTCCCTCTCGTACTCAGAATTC  845
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCCCCTCCTCCAAAGTGTTACTCCCTCTCGTACTCAGAATTC  845

seq1: chr15_39943384_39944593
seq2: B6Ng01-004M16.g_65_1275

seq1  GAATTCTATTTCCTCACTGAATTAGAAATACAAGTTCAAGTTCCTGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTTCCTCACTGAATTAGAAATACAAGTTCAAGTTCCTGACAG  50

seq1  AATCCATTTCTTGTTGGACCGCTCTTTCTGGCATAGCAATGTGCGGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATTTCTTGTTGGACCGCTCTTTCTGGCATAGCAATGTGCGGAGAT  100

seq1  AGAGGTGCCTGGTACTTTACCATCTCTTATGTGCATACCGGATCACAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGCCTGGTACTTTACCATCTCTTATGTGCATACCGGATCACAGGA  150

seq1  AGGCCCACACTTAGACATTCAACTTAAACTTTATAGACCCTGTAGATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCACACTTAGACATTCAACTTAAACTTTATAGACCCTGTAGATCCT  200

seq1  GCCTCTAAATCACACAGATGCTTCAGCACACACATTTAAGGAGACACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTAAATCACACAGATGCTTCAGCACACACATTTAAGGAGACACAAT  250

seq1  TAGATCCACCACACCATGTTCACATGTTAGTTCATATTTGGGGACTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCACCACACCATGTTCACATGTTAGTTCATATTTGGGGACTGTGG  300

seq1  TCCAGCTTGCACAGAATGTCAGATATTGAATTTCCTCTCTATTGAATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTTGCACAGAATGTCAGATATTGAATTTCCTCTCTATTGAATTTC  350

seq1  GCCTTGGCTTCAATCTTGGCAACAACTTGGTAATGCGAGCTGACATTTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGCTTCAATCTTGGCAACAACTTGGTAATGCGAGCTGACATTTCG  400

seq1  AACAAACCGTCTTTTGAATCTCAGGCTTAGATTATTTCATTCCTTGCCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCGTCTTTTGAATCTCAGGCTTAGATTATTTCATTCCTTGCCCG  450

seq1  TGGTTATGTTCACTAGCAAATAAACAGCAGCAGTATTTTCTCATTGGGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATGTTCACTAGCAAATAAACAGCAGCAGTATTTTCTCATTGGGCG  500

seq1  TCCAGTGCTATTTCTTGTACACCGCAGCGCGCCACAGAGTGTTCTTATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGCTATTTCTTGTACACCGCAGCGCGCCACAGAGTGTTCTTATTC  550

seq1  TGCTGCTTCTGCTAACGAGAAGGAAATGCAGTGTGGATGGCAGATGTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTTCTGCTAACGAGAAGGAAATGCAGTGTGGATGGCAGATGTCTG  600

seq1  AACACTTGGATGATTGAGCATGGCCATCTCCTTTGGTCCAAGGCAAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTGGATGATTGAGCATGGCCATCTCCTTTGGTCCAAGGCAAACAT  650

seq1  TCATCTTGGAATGAACCTGACAGATAACCCCACTAAGATAAACCCACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTGGAATGAACCTGACAGATAACCCCACTAAGATAAACCCACTGA  700

seq1  CTAACCTTAGGGGACATTTCTGCTACTTGTCGATGATCACCTAAATTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTTAGGGGACATTTCTGCTACTTGTCGATGATCACCTAAATTTGT  750

seq1  CCCTCACATTTTATTTTAGAATCTGAGGACCTTGGAAAAGTTTGAGGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACATTTTATTTTAGAATCTGAGGACCTTGGAAAAGTTTGAGGGTC  800

seq1  CTTTTGCTGCTCTGTCCCTGAGCTTGAAACATAGTGACTGAGGCTGTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTGCTCTGTCCCTGAGCTTGAAACATAGTGACTGAGGCTGTCAG  850

seq1  TCAGGCCTGTGGAGGCTCTGTGAGGAGGCAGCCCCTGTACAGCAATTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCTGTGGAGGCTCTGTGAGGAGGCAGCCCCTGTACAGCAATTTCA  900

seq1  CACTGGATACAGTGTAGACAACACATGGCAGGCCAGGGAAGACAGAGGAG  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CACTGGATACAGTGTAGACAACAAATGGCAGGCCAGGGAAGACAGAGGAG  950

seq1  -AGAAATGAAAGCCAGTCTTTGAAGCTGCCTGGAGGTATACAGATGTCAC  999
       ||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGAAATGAAAGCCAGTCTTTGAAGCTGCCTGGA-GTATACAGATGTCAC  999

seq1  ACGAG-AGAAATCAGATGTAGGAGAGACAGCCCTGCAATATCCCTAAT-A  1047
      ||||| |||||||||||||||   ||| |||||||||||||||||||| |
seq2  ACGAGAAGAAATCAGATGTAGAGAAGAAAGCCCTGCAATATCCCTAATAA  1049

seq1  GGCAAACCCACGGAAACAGAACCGGAGGCAAGGGTGGAGTAAGGAGACGG  1097
      ||||||||||| ||||||||  | || |||||||||||||||||||||||
seq2  GGCAAACCCAC-GAAACAGA--CTGAAGCAAGGGTGGAGTAAGGAGACGG  1096

seq1  GGTCAGTCTTAATGGATGCTAGGAG-ACATTTTGCTAGAATACAAAAAGC  1146
      |||||||| || || |||||||||| ||||||||||||||||||||||||
seq2  GGTCAGTC-TATTGAATGCTAGGAGAACATTTTGCTAGAATACAAAAAGC  1145

seq1  ACATTTATACACACAAACTGAAATGGTC-ATTGTATATGTTGGTGAATAC  1195
      ||| |||||  ||| ||||| ||||  | ||||||| |||||||||||||
seq2  ACA-TTATAACCACGAACTGGAATGTCCAATTGTAT-TGTTGGTGAATAC  1193

seq1  A-AACTTA--ATCTCTCA  1210
      | ||| ||  ||||||||
seq2  ATAACCTAATATCTCTCA  1211