BAC Information

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BAC

Clone NameB6Ng01-005L21
Chromosome15 (Build37)
Map Location 34,331,628 - 34,464,520
singlet/doubletdoublet
Overlap geneMatn2, Rpl30, BC030476, Hrsp12, Pop1
Upstream genePgcp, 1700084J12Rik, Tspyl5, LOC675463, Mtdh, Laptm4b
Downstream geneNpal2, Kcns2, Stk3, Osr2, Vps13b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005L21.bB6Ng01-005L21.g
ACCDH842796DH842797
length1,142405
definitionDH842796|Mus musculus domesticus DNA, BAC clone: B6Ng01-005L21, 5' end.DH842797|Mus musculus domesticus DNA, BAC clone: B6Ng01-005L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,331,628 - 34,332,787)(34,464,110 - 34,464,520)
sequence
gaattcagtatcatctgattaaactgaggaagatactttgaggcagcatc
ataccggagggaagactcctggccaggtttttgccttcttcctcatctcc
tgctggagagtgccattgtcaattgcagacattcatcatgaaggtagtgg
tgcaaagcctggaatgccatcagggtctgaggctgagcaattgcattgtg
acccagatgtgggctgtgagattctggattctcatactcacattggagct
catcatagctggaataacatccttaaaagctagtgtgaatttcccagtta
gttagtctgaggaccagtctaggaactgccattcacatcagctacatcac
tcgaagagactatctttattgctctagacctggatttccttagtgaggag
tttagacattgtgcttcaacatttttaaccttggtgttttttctggaatt
tctttcctgagtcatctggtatcgtgacttgagtcacgttgaactcttct
tgagtcgccttgaactcttcacgaattgatatacatcaaggacattatgt
gacaattctggcatgtgtctttggcataccagaccctactaaatgaagtt
acatccattccacaccctttattctgctcctcagtttatggtttaaccag
cagtgcagtacacagaaggcatcaataacctcaccttatttcttggcatc
tttggtgtctaacagtcctgattcttttttgctgtgtctccagagtgcaa
acccatgaaggccaggccttggtagtgttcacatttacattggtacatct
agcttagggcctggcccttagctggcaaatgactgactgaatgataattc
ccagcttgcctcagcaagcagtattcagcagctctttccagggattgtgg
gaaccctggagcctacccaagtagcctcatacagtctgaatgggggtctt
tctctcttagggatcaactactgtgcactgaacaaccaggctgtgagcat
gagtgtgtgaacacagaggaggtcactactgcgctgcgtcagctacatct
gacccaatggcagacctgcagcgtgagtttcccagggtgtggggtgctgt
atggatggagaacaaccattcaccatctttggctcatagcat
ccagtctggaccacaatgtctcattaagtttccacctagatgtcaacagc
tcagaagagctgatgtcatagagggatacagtttcttggtgtagacgaag
ctggctaagcagacaggagttatgagacatctgagactccattactcatt
cacaggtctctgaagtcagagggtccaaagaggcaggcctctcggcccca
gtggagtcacacatcataaggacccagagagcagctagcagatgctcata
ctttggctcaggcttgggctctcaggtgattctcatacagacaagccaga
gatgaaacaacatcctatagcatcctatagttctggggagacctgcccag
aactgtgtaactaacttgctattctgacatctgcaactaacacagtgtgt
gtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_34331628_34332787
seq2: B6Ng01-005L21.b_46_1187

seq1  GAATTCAGTATCATCTGATTAAACTGAGGAAGATACTTTGAGGCAGCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATCATCTGATTAAACTGAGGAAGATACTTTGAGGCAGCATC  50

seq1  ATACCGGAGGGAAGACTCCTGGCCAGGTTTTTGCCTTCTTCCTCATCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCGGAGGGAAGACTCCTGGCCAGGTTTTTGCCTTCTTCCTCATCTCC  100

seq1  TGCTGGAGAGTGCCATTGTCAATTGCAGACATTCATCATGAAGGTAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAGAGTGCCATTGTCAATTGCAGACATTCATCATGAAGGTAGTGG  150

seq1  TGCAAAGCCTGGAATGCCATCAGGGTCTGAGGCTGAGCAATTGCATTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGCCTGGAATGCCATCAGGGTCTGAGGCTGAGCAATTGCATTGTG  200

seq1  ACCCAGATGTGGGCTGTGAGATTCTGGATTCTCATACTCACATTGGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGATGTGGGCTGTGAGATTCTGGATTCTCATACTCACATTGGAGCT  250

seq1  CATCATAGCTGGAATAACATCCTTAAAAGCTAGTGTGAATTTCCCAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAGCTGGAATAACATCCTTAAAAGCTAGTGTGAATTTCCCAGTTA  300

seq1  GTTAGTCTGAGGACCAGTCTAGGAACTGCCATTCACATCAGCTACATCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTCTGAGGACCAGTCTAGGAACTGCCATTCACATCAGCTACATCAC  350

seq1  TCGAAGAGACTATCTTTATTGCTCTAGACCTGGATTTCCTTAGTGAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAGAGACTATCTTTATTGCTCTAGACCTGGATTTCCTTAGTGAGGAG  400

seq1  TTTAGACATTGTGCTTCAACATTTTTAACCTTGGTGTTTTTTCTGGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGACATTGTGCTTCAACATTTTTAACCTTGGTGTTTTTTCTGGAATT  450

seq1  TCTTTCCTGAGTCATCTGGTATCGTGACTTGAGTCACGTTGAACTCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTGAGTCATCTGGTATCGTGACTTGAGTCACGTTGAACTCTTCT  500

seq1  TGAGTCGCCTTGAACTCTTCACGAATTGATATACATCAAGGACATTATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCGCCTTGAACTCTTCACGAATTGATATACATCAAGGACATTATGT  550

seq1  GACAATTCTGGCATGTGTCTTTGGCATACCAGACCCTACTAAATGAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTCTGGCATGTGTCTTTGGCATACCAGACCCTACTAAATGAAGTT  600

seq1  ACATCCATTCCACACCCTTTATTCTGCTCCTCAGTTTATGGTTTAACCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCATTCCACACCCTTTATTCTGCTCCTCAGTTTATGGTTTAACCAG  650

seq1  CAGTGCAGTACACAGAAGGCATCAATAACCTCACCTTATTTCTTGGCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCAGTACACAGAAGGCATCAATAACCTCACCTTATTTCTTGGCATC  700

seq1  TTTGGTGTCTAACAGTCCTGATTCTTTTTTGCTGTGTCTCCAGAGTGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGTCTAACAGTCCTGATTCTTTTTTGCTGTGTCTCCAGAGTGCAA  750

seq1  ACCCATGAAGGCCAGGCCTTGGTAGTGTTCACATTTACATTGGTACATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGAAGGCCAGGCCTTGGTAGTGTTCACATTTACATTGGTACATCT  800

seq1  AGCTTAGGGCCTGGCCCTTAGCTGGCAAATGACTGACTGAATGATAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGGGCCTGGCCCTTAGCTGGCAAATGACTGACTGAATGATAATTC  850

seq1  CCAGCTTGCCTCAGCAAGCAGTATTCAGCAGCTCTTTCCAGGGATTGTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTGCCTCAGCAAGCAGTATTCAGCAGCTCTTTCCAGGGATTGTGG  900

seq1  GAACCCTGGAGCCTACCCAAGTAGCCTCATACAGTCTGAATGGGGGGTCT  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAACCCTGGAGCCTACCCAAGTAGCCTCATACAGTCTGAAT-GGGGGTCT  949

seq1  TTCTCTCCTTAGGGATCAACTACTGTGCACTGAACAAACCAGGCTGTGAG  1000
      |||||| |||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCTCT-CTTAGGGATCAACTACTGTGCACTGAAC-AACCAGGCTGTGAG  997

seq1  CATGAGTGTGTGAACACAGAGGAGGGTCACTACTGCCGCTGCCGTCAGGG  1050
      ||||||||||||||||||||||| ||||||||||| ||||| |||||  |
seq2  CATGAGTGTGTGAACACAGAGGA-GGTCACTACTG-CGCTG-CGTCA--G  1042

seq1  CTACAATCTGGACCCCAATGGCAAGACCTGCAGCCGTGAGTGTGCCCCAG  1100
      |||| |||||   ||||||||| |||||||||| ||||||| |  |||| 
seq2  CTAC-ATCTG--ACCCAATGGC-AGACCTGCAG-CGTGAGTTT--CCCA-  1084

seq1  GGGTGT-GGGTGCTG-ATGGAGTGGAGACCAACCATTCACCATCCTTTGG  1148
      |||||| |||||||| ||||| |||||| |||||||||||||||  || |
seq2  GGGTGTGGGGTGCTGTATGGA-TGGAGAACAACCATTCACCATC--TTTG  1131

seq1  GCTCATTAGCAT  1160
      ||||| ||||||
seq2  GCTCA-TAGCAT  1142

seq1: chr15_34464110_34464520
seq2: B6Ng01-005L21.g_69_479 (reverse)

seq1  CACACACACACTGTGTTAGTTGCAGATGTCAGAATAGCAAGTTAGTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACTGTGTTAGTTGCAGATGTCAGAATAGCAAGTTAGTTACA  50

seq1  CAGTTCTGGGCAGGTCTCCCCAGAACTATAGGATGCTATAGGATGTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTGGGCAGGTCTCCCCAGAACTATAGGATGCTATAGGATGTTGTT  100

seq1  TCATCTCTGGCTTGTCTGTATGAGAATCACCTGAGAGCCCAAGCCTGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTGGCTTGTCTGTATGAGAATCACCTGAGAGCCCAAGCCTGAGC  150

seq1  CAAAGTATGAGCATCTGCTAGCTGCTCTCTGGGTCCTTATGATGTGTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTATGAGCATCTGCTAGCTGCTCTCTGGGTCCTTATGATGTGTGAC  200

seq1  TCCACTGGGGCCGAGAGGCCTGCCTCTTTGGACCCTCTGACTTCAGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGGGGCCGAGAGGCCTGCCTCTTTGGACCCTCTGACTTCAGAGAC  250

seq1  CTGTGAATGAGTAATGGAGTCTCAGATGTCTCATAACTCCTGTCTGCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAATGAGTAATGGAGTCTCAGATGTCTCATAACTCCTGTCTGCTTA  300

seq1  GCCAGCTTCGTCTACACCAAGAAACTGTATCCCTCTATGACATCAGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTTCGTCTACACCAAGAAACTGTATCCCTCTATGACATCAGCTCT  350

seq1  TCTGAGCTGTTGACATCTAGGTGGAAACTTAATGAGACATTGTGGTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCTGTTGACATCTAGGTGGAAACTTAATGAGACATTGTGGTCCAG  400

seq1  ACTGGGAATTC  411
      |||||||||||
seq2  ACTGGGAATTC  411