BAC Information

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BAC

Clone NameB6Ng01-005M23
Chromosome15 (Build37)
Map Location 29,470,501 - 29,718,236
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040675, LOC100040689, LOC100040702, LOC667153
Downstream geneLOC382975, Ctnnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005M23.bB6Ng01-005M23.g
ACCDH842846DH842847
length1,161313
definitionDH842846|Mus musculus domesticus DNA, BAC clone: B6Ng01-005M23, 5' end.DH842847|Mus musculus domesticus DNA, BAC clone: B6Ng01-005M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,470,501 - 29,471,661)(29,717,924 - 29,718,236)
sequence
gaattcagtaaattaaaatttctagtatgttaaagtcatgatcacatagg
caaagtatatactttttataaatagagtacatttctcatatgcatttatg
taaagtaaaaatagtgaaataatttactcagttcttacttgaatcacaca
attctctaagcactaaggcaatccataaagtttttgcctcaaaacataca
caacaaggcccctggaatgtacatagcagacacgtggagcttggtctcca
ttgggtctctcaacaattggaatgaggcagtccctaaagctgtaggctga
ctatggtatccattcctcatcaaagctgtcttctctgcctgagtggtaga
ggatgtgcctagtgtgacagagacgtgaggcagccaagagggaggatgtg
agatggactctgcgagagggaactggagaaggagcagcatttgggatgtg
aatgaatgaatgaaaaaataaatttaaataaataaatgaaaatacacaaa
accttgcagtaattgtatagactactcctagcataactcatataagagtt
ttgaacaaaggctgattatatatatatttaatcagtctacagtagttttc
ttaaccaatcatatataaaattgtagtctcagttagatcacatcattaat
tttcctttgaactctatttatttatttatttatttatttatttatttatt
tatttacatcccaaatactgcttccctcctcgtatcgcctccacagattt
tttttttattgctctccttcacctctgagagggagtgcccactcccctgt
atcctagtaccctggtaggtcaaatctctgtaggattaagagcatcctcc
aacccttctcacaacttttacataagagttcccaaccttcgtccaacatt
tggctgtgggtttctgcatctgtctcagtcatctgctggatagacagtta
tgctagctttctgtttgcagcatagtggtatcattaatagtgccagatga
agtttcccctaagaatggtctcaagtggaccagtcttaagtgccattcct
ccaatctccgggtttcatcttttgttcctgcatttctccaatcctagaga
gctccagaaaattggaaatagattcatacctgagaactctacatgtccct
cctcctcgggc
aggaagtacatgcacttaagcaacagtgttggtaattcagtctcaatgca
gaacaagcacttaactcatcctatttctcctccctcggactccaagagga
tgttcatgagataaactgtgggagtggggaccaaattctgtgggagaggg
tcaaattctggactgtaaaaaaaaagtaataaaaaattatgagttctatt
ttcttatatcagcctggtacattgttttattttaactattctactttttg
agatctctgtgtgtatgtgcgcatgtgtgtgtatgtatgtgtgtgtgtgt
gtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_29470501_29471661
seq2: B6Ng01-005M23.b_44_1204

seq1  GAATTCAGTAAATTAAAATTTCTAGTATGTTAAAGTCATGATCACATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAATTAAAATTTCTAGTATGTTAAAGTCATGATCACATAGG  50

seq1  CAAAGTATATACTTTTTATAAATAGAGTACATTTCTCATATGCATTTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTATATACTTTTTATAAATAGAGTACATTTCTCATATGCATTTATG  100

seq1  TAAAGTAAAAATAGTGAAATAATTTACTCAGTTCTTACTTGAATCACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAAAAATAGTGAAATAATTTACTCAGTTCTTACTTGAATCACACA  150

seq1  ATTCTCTAAGCACTAAGGCAATCCATAAAGTTTTTGCCTCAAAACATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTAAGCACTAAGGCAATCCATAAAGTTTTTGCCTCAAAACATACA  200

seq1  CAACAAGGCCCCTGGAATGTACATAGCAGACACGTGGAGCTTGGTCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGGCCCCTGGAATGTACATAGCAGACACGTGGAGCTTGGTCTCCA  250

seq1  TTGGGTCTCTCAACAATTGGAATGAGGCAGTCCCTAAAGCTGTAGGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCTCTCAACAATTGGAATGAGGCAGTCCCTAAAGCTGTAGGCTGA  300

seq1  CTATGGTATCCATTCCTCATCAAAGCTGTCTTCTCTGCCTGAGTGGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTATCCATTCCTCATCAAAGCTGTCTTCTCTGCCTGAGTGGTAGA  350

seq1  GGATGTGCCTAGTGTGACAGAGACGTGAGGCAGCCAAGAGGGAGGATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGCCTAGTGTGACAGAGACGTGAGGCAGCCAAGAGGGAGGATGTG  400

seq1  AGATGGACTCTGCGAGAGGGAACTGGAGAAGGAGCAGCATTTGGGATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGACTCTGCGAGAGGGAACTGGAGAAGGAGCAGCATTTGGGATGTG  450

seq1  AATGAATGAATGAAAAAATAAATTTAAATAAATAAATGAAAATACACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGAATGAAAAAATAAATTTAAATAAATAAATGAAAATACACAAA  500

seq1  ACCTTGCAGTAATTGTATAGACTACTCCTAGCATAACTCATATAAGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCAGTAATTGTATAGACTACTCCTAGCATAACTCATATAAGAGTT  550

seq1  TTGAACAAAGGCTGATTATATATATATTTAATCAGTCTACAGTAGTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAAAGGCTGATTATATATATATTTAATCAGTCTACAGTAGTTTTC  600

seq1  TTAACCAATCATATATAAAATTGTAGTCTCAGTTAGATCACATCATTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAATCATATATAAAATTGTAGTCTCAGTTAGATCACATCATTAAT  650

seq1  TTTCCTTTGAACTCTATTTATTTATTTATTTATTTATTTATTTATTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTGAACTCTATTTATTTATTTATTTATTTATTTATTTATTTATT  700

seq1  TATTTACATCCCAAATACTGCTTCCCTCCTCGTATCGCCTCCACAGATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACATCCCAAATACTGCTTCCCTCCTCGTATCGCCTCCACAGATTT  750

seq1  TTTTTTTATTGCTCTCCTTCACCTCTGAGAGGGAGTGCCCACTCCCCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATTGCTCTCCTTCACCTCTGAGAGGGAGTGCCCACTCCCCTGT  800

seq1  ATCCTAGTACCCTGGTAGGTCAAATCTCTGTAGGATTAAGAGCATCCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGTACCCTGGTAGGTCAAATCTCTGTAGGATTAAGAGCATCCTCC  850

seq1  AACCCTTCTCACAACTTTTACATAAGAGTTCCCAACCTTCGTCCAACATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTCTCACAACTTTTACATAAGAGTTCCCAACCTTCGTCCAACATT  900

seq1  TGGCTGTGGGTTTCTGCATCTGTCTCAGTCATCTGCTGGATAGACAGTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGGGTTTCTGCATCTGTCTCAGTCATCTGCTGGATAGACAGTTA  950

seq1  TGCTAGGCTTCTGTTTGCAAGCATAGTGGTATCATTAATAGTGCCAAGGA  1000
      ||||||  |||||||||| |||||||||||||||||||||||||||  ||
seq2  TGCTAGCTTTCTGTTTGC-AGCATAGTGGTATCATTAATAGTGCCA--GA  997

seq1  TTGAAGTTTCCTCATAGAATGGGTCTCAAGTTGGACCAGTTCTTAGTTGG  1050
       |||||||||| |  ||||| ||||||||| |||||||||  | |||  |
seq2  -TGAAGTTTCCCCTAAGAAT-GGTCTCAAG-TGGACCAGTCTTAAGT--G  1042

seq1  CCATTCCCTCAATCTC--GGTTTCATC-TTTGTCCCTGCATTTCTTCAAT  1097
      |||||||  |||||||  ||||||||| ||||| ||||||||||| ||||
seq2  CCATTCCTCCAATCTCCGGGTTTCATCTTTTGTTCCTGCATTTCTCCAAT  1092

seq1  -CTAG-GAGCTTCACAGAAAATTGGAAATAG-TTC-TACCTGAAGACTC-  1142
       |||| |||||   ||||||||||||||||| ||| |||||||  |||| 
seq2  CCTAGAGAGCT--CCAGAAAATTGGAAATAGATTCATACCTGAGAACTCT  1140

seq1  AGCTGTCCCT-CTCCT-GGGC  1161
      |  ||||||| ||||| ||||
seq2  ACATGTCCCTCCTCCTCGGGC  1161

seq1: chr15_29717924_29718236
seq2: B6Ng01-005M23.g_76_388 (reverse)

seq1  CACACACACACACACACACACACACATACATACACACACATGCGCACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACATACATACACACACATGCGCACATA  50

seq1  CACACAGAGATCTCAAAAAGTAGAATAGTTAAAATAAAACAATGTACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAGATCTCAAAAAGTAGAATAGTTAAAATAAAACAATGTACCAG  100

seq1  GCTGATATAAGAAAATAGAACTCATAATTTTTTATTACTTTTTTTTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATATAAGAAAATAGAACTCATAATTTTTTATTACTTTTTTTTTACA  150

seq1  GTCCAGAATTTGACCCTCTCCCACAGAATTTGGTCCCCACTCCCACAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAATTTGACCCTCTCCCACAGAATTTGGTCCCCACTCCCACAGTT  200

seq1  TATCTCATGAACATCCTCTTGGAGTCCGAGGGAGGAGAAATAGGATGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCATGAACATCCTCTTGGAGTCCGAGGGAGGAGAAATAGGATGAGT  250

seq1  TAAGTGCTTGTTCTGCATTGAGACTGAATTACCAACACTGTTGCTTAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCTTGTTCTGCATTGAGACTGAATTACCAACACTGTTGCTTAAGT  300

seq1  GCATGTACTTCCT  313
      |||||||||||||
seq2  GCATGTACTTCCT  313