BAC Information

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BAC

Clone NameB6Ng01-009A12
Chromosome15 (Build37)
Map Location 85,890,904 - 86,082,140
singlet/doubletdoublet
Overlap geneBC021523, Cerk, LOC100042300, Tbc1d22a
Upstream gene3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1
Downstream geneLOC100042309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009A12.bB6Ng01-009A12.g
ACCDH845088DH845089
length9911,184
definitionDH845088|Mus musculus domesticus DNA, BAC clone: B6Ng01-009A12, 5' end.DH845089|Mus musculus domesticus DNA, BAC clone: B6Ng01-009A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,890,904 - 85,891,896)(86,080,929 - 86,082,140)
sequence
gaattctttgtggaccatcatttccctgctttcctctgccatcctggctg
atggtggtgaacatggctgtccctgttggttccggagatgtctgtctgag
tccatgctagaacttatgtcctataaactgcccgagatagtctcagagtt
gaggtctgtttccacccagcctgggcacctgtttatcctgtgcctcctcc
ccaggcaggcagagaggtttttgcagaggtgtattccttaagggaaaacc
agtggtctctctctctccaaacctcctggtgccctccattatcgtggctc
ccccggagtggcgccagcagacagcgcagtcgtcggtgccaacagccgtg
gcctccgctgtcctcattctctctgggcttcaccttcaccttcaccacct
agaaagaggagagtcggacctgtttcctgaatcaacatttctgcctcaca
atagcgagtgctccacacaatggaaacagtgtcaccggaggctctgagac
ttggctgtgcttgtacggcataggaagttacagctgtttagaaatagcaa
ctccagccatgccacatctggacagaattcatgtctggagaaccaaaggc
ttagtattctgctgtgggatccttgttggctaatgtgctttgtggtgtcc
cttccttctctggggacacatgggagccctatccagttcctcatgcactg
gtagggcttctctctagaagccggatctactgagcctttacagggttggg
gtgctcatgatggggcaaggactgtgtttgggggccgtcctctttgggga
gctgggtaggtaggttctccttctaagcagccctggcctctttgctttgg
tgtttggctttcttgtatatcataatggcagcactttagtgtgtgtggcg
gtattgtctgtcagtggagatgcagtgactggcttgtgtggttgggccac
cttttctgagctttctgcattcttccctgctagtggactgc
gaattcctcatctggagaaagtgttattctgctgtcaacattgggcactg
tgaatgtctccctttgagaccatttcaacacagtctaaggcttcatcaga
aagcctgtcctggacatgacacccacacaatggaatcagcagacactcct
gaccttcccatatacaacaaaggcatacagatacgtgcagacatctgtca
ccatcagcactgtccccatcagcactgtcaccatcagcactgtccccatc
agcactgtccccatcagcactgtcaccatcagcactgtcaccatcagcac
tgtcaccatcagcactgtcaccatcagcactgtccccatcagcactgtca
ccaccagcactgtcaccaccagcactgtcaccatcagcactgtcagctgc
agcagcagcactgccatcatcttcttctctgtcattaccatcgaccttga
ttaccacatcctcaccagtaccatccacatcaccaacatcactccagata
gctggacagtccatgactccactcaaaagtctgctttccattactaggca
agggcagaggacagcagactagagaccagcagcactctggtgtccctagg
aatctggaagaaaatgatggatctgagccgtcaacgtctggtaaggagga
gcaacaccgcacagagtggactgtggagattaggtaagcacggagatact
gagtttctagtttacacaaacagacgatgatctagaatggtggactgaag
cacgaagaggagagctcccttcccctgcccagggccagtagataaaagga
acaaaaaccccataagcaaaatcactgaaaacaaagttttcatggagaga
ccaataagtcaaagaagcagaggcagcattgtaagctccatcatcactgg
agcaaggaggtagcagatctcgagggaatctgaaacttatcaccggcaca
ctgggagatgcactccagaacagtcatatggcacttacagaaggagctgg
tctgtctgaaactcagcgaggattctcttcactcacttagaagtgagaac
ctaagatctcgagcgtggagcatctgtcgtctgctcagctgaaacacggc
tggtacagacatatcccggtcctggtagttcaatgtaggctagcctcgcg
aaactttggcaatcgagagcgagctgggacgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_85890904_85891896
seq2: B6Ng01-009A12.b_49_1039

seq1  GAATTCTTTGTGGACCATCATTTCCCTGCTTTCCTCTGCCATCCTGGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTGGACCATCATTTCCCTGCTTTCCTCTGCCATCCTGGCTG  50

seq1  ATGGTGGTGAACATGGCTGTCCCTGTTGGTTCCGGAGATGTCTGTCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGTGAACATGGCTGTCCCTGTTGGTTCCGGAGATGTCTGTCTGAG  100

seq1  TCCATGCTAGAACTTATGTCCTATAAACTGCCCGAGATAGTCTCAGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCTAGAACTTATGTCCTATAAACTGCCCGAGATAGTCTCAGAGTT  150

seq1  GAGGTCTGTTTCCACCCAGCCTGGGCACCTGTTTATCCTGTGCCTCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTGTTTCCACCCAGCCTGGGCACCTGTTTATCCTGTGCCTCCTCC  200

seq1  CCAGGCAGGCAGAGAGGTTTTTGCAGAGGTGTATTCCTTAAGGGAAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGGCAGAGAGGTTTTTGCAGAGGTGTATTCCTTAAGGGAAAACC  250

seq1  AGTGGTCTCTCTCTCTCCAAACCTCCTGGTGCCCTCCATTATCGTGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCTCTCTCTCTCCAAACCTCCTGGTGCCCTCCATTATCGTGGCTC  300

seq1  CCCCGGAGTGGCGCCAGCAGACAGCGCAGTCGTCGGTGCCAACAGCCGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGAGTGGCGCCAGCAGACAGCGCAGTCGTCGGTGCCAACAGCCGTG  350

seq1  GCCTCCGCTGTCCTCATTCTCTCTGGGCTTCACCTTCACCTTCACCACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCGCTGTCCTCATTCTCTCTGGGCTTCACCTTCACCTTCACCACCT  400

seq1  AGAAAGAGGAGAGTCGGACCTGTTTCCTGAATCAACATTTCTGCCTCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGGAGAGTCGGACCTGTTTCCTGAATCAACATTTCTGCCTCACA  450

seq1  ATAGCGAGTGCTCCACACAATGGAAACAGTGTCACCGGAGGCTCTGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCGAGTGCTCCACACAATGGAAACAGTGTCACCGGAGGCTCTGAGAC  500

seq1  TTGGCTGTGCTTGTACGGCATAGGAAGTTACAGCTGTTTAGAAATAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGTGCTTGTACGGCATAGGAAGTTACAGCTGTTTAGAAATAGCAA  550

seq1  CTCCAGCCATGCCACATCTGGACAGAATTCATGTCTGGAGAACCAAAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCATGCCACATCTGGACAGAATTCATGTCTGGAGAACCAAAGGC  600

seq1  TTAGTATTCTGCTGTGGGATCCTTGTTGGCTAATGTGCTTTGTGGTGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATTCTGCTGTGGGATCCTTGTTGGCTAATGTGCTTTGTGGTGTCC  650

seq1  CTTCCTTCTCTGGGGACACATGGGAGCCCTATCCAGTTCCTCATGCACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCTCTGGGGACACATGGGAGCCCTATCCAGTTCCTCATGCACTG  700

seq1  GTAGGGCTTCTCTCTAGAAGCCGGATCTACTGAGCCTTTACAGGGTTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGCTTCTCTCTAGAAGCCGGATCTACTGAGCCTTTACAGGGTTGGG  750

seq1  GTGCTCATGATGGGGCAAGGACTGTGTTTGGGGGCCGTCCTCTTTGGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCATGATGGGGCAAGGACTGTGTTTGGGGGCCGTCCTCTTTGGGGA  800

seq1  GCTGGGTAGGTAGGTTCTCCTTCTAAGCAGCCCTGGCCCCTCTGCTCTGG  850
      |||||||||||||||||||||||||||||||||||||| || |||| |||
seq2  GCTGGGTAGGTAGGTTCTCCTTCTAAGCAGCCCTGGCCTCTTTGCTTTGG  850

seq1  TGTTTGGCTTTCTTGGTATATCATAATGGCAGCACTTTAGTGTGTGTGGC  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTTTGGCTTTCTT-GTATATCATAATGGCAGCACTTTAGTGTGTGTGGC  899

seq1  GGTAATTGTCTGTCAGTGGAGATGCAGTGACTGGCTTGTGTGGTTGGGCC  950
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGT-ATTGTCTGTCAGTGGAGATGCAGTGACTGGCTTGTGTGGTTGGGCC  948

seq1  ACCTTTTCTGAGC-TTCTGCATTCTTCCCTGCTAGGTGGACTGC  993
      ||||||||||||| |||||||||||||||||||| |||||||||
seq2  ACCTTTTCTGAGCTTTCTGCATTCTTCCCTGCTA-GTGGACTGC  991

seq1: chr15_86080929_86082140
seq2: B6Ng01-009A12.g_71_1254 (reverse)

seq1  ATTCGTCCCAGCTTCTGCTTCTTTCGGTTTGCTTCGAGGCTCTGCTGTGG  50
      |||||||||||||       || || | ||||  | | | |  || | ||
seq2  ATTCGTCCCAGCT-----CGCTCTC-GATTGC--CAAAGTTTCGC-GAGG  41

seq1  CTTAGCCTACACTTGTACTTACCCTTGTGCCGGG-TATGTTCTTGTTACC  99
      | ||||||||| ||| || ||||   |  ||||| |||| |||   ||||
seq2  C-TAGCCTACA-TTGAAC-TACC--AGGACCGGGATATG-TCT--GTACC  83

seq1  AGCGCTGTCTCAGCTTGAGCATGACTGCAGGGTGCTCCACGGCTCTGTGG  149
      |||  ||| ||||| |||||| |||  || | |||||||||   ||   |
seq2  AGCCGTGTTTCAGC-TGAGCA-GACGACA-GATGCTCCACG---CTCGAG  127

seq1  TTCTCTGGGTCTCACTTTCTAAGTGGGTGGAAGGGATCCTCGCTGAGTTT  199
       |||  || |||||| ||||||||| ||| |  | |||||||||||||||
seq2  ATCTTAGGTTCTCAC-TTCTAAGTGAGTGAAGAGAATCCTCGCTGAGTTT  176

seq1  CAGGACAGGCCAGCTCCTTCTGTGAGGTGCCATATGACTGTTCTGGGGTG  249
      || ||||| |||||||||||||| | |||||||||||||||||||| |||
seq2  CA-GACAGACCAGCTCCTTCTGT-AAGTGCCATATGACTGTTCTGGAGTG  224

seq1  CATCTCCCAGTGGTGCCGGGTGATTAGTTTTCAGATTCCCTCGGGATCTG  299
      ||||||||||| ||||| |||||| || ||||||||||||||| ||||||
seq2  CATCTCCCAGT-GTGCC-GGTGATAAG-TTTCAGATTCCCTCGAGATCTG  271

seq1  CTACCTCCTTGCTCCAGTGATGATGGAGCTTACAATGCTGCTTCTGCTTC  349
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTACCTCCTTGCTCCAGTGATGATGGAGCTTACAATGCTGCCTCTGCTTC  321

seq1  TTTGGCTTATTGGTCTCTCCATGAAAACTTTGTTTTCAGTGATTTTGCTT  399
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTATTGGTCTCTCCATGAAAACTTTGTTTTCAGTGATTTTGCTT  371

seq1  ATGGGGTTTTTGTTCCTTTTATCTACTGGCCCTGGGCAGGGGAAGGGAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTTTTTGTTCCTTTTATCTACTGGCCCTGGGCAGGGGAAGGGAGC  421

seq1  TCTCCTCTTCGTGCTTCAGTCCACCATTCTAGATCATCGTCTGTTTGTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTTCGTGCTTCAGTCCACCATTCTAGATCATCGTCTGTTTGTGT  471

seq1  AAACTAGAAACTCAGTATCTCCGTGCTTACCTAATCTCCACAGTCCACTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGAAACTCAGTATCTCCGTGCTTACCTAATCTCCACAGTCCACTC  521

seq1  TGTGCGGTGTTGCTCCTCCTTACCAGACGTTGACGGCTCAGATCCATCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGGTGTTGCTCCTCCTTACCAGACGTTGACGGCTCAGATCCATCAT  571

seq1  TTTCTTCCAGATTCCTAGGGACACCAGAGTGCTGCTGGTCTCTAGTCTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCAGATTCCTAGGGACACCAGAGTGCTGCTGGTCTCTAGTCTGC  621

seq1  TGTCCTCTGCCCTTGCCTAGTAATGGAAAGCAGACTTTTGAGTGGAGTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTGCCCTTGCCTAGTAATGGAAAGCAGACTTTTGAGTGGAGTCA  671

seq1  TGGACTGTCCAGCTATCTGGAGTGATGTTGGTGATGTGGATGGTACTGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGTCCAGCTATCTGGAGTGATGTTGGTGATGTGGATGGTACTGGT  721

seq1  GAGGATGTGGTAATCAAGGTCGATGGTAATGACAGAGAAGAAGATGATGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGTGGTAATCAAGGTCGATGGTAATGACAGAGAAGAAGATGATGG  771

seq1  CAGTGCTGCTGCTGCAGCTGACAGTGCTGATGGTGACAGTGCTGGTGGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGCTGCTGCAGCTGACAGTGCTGATGGTGACAGTGCTGGTGGTG  821

seq1  ACAGTGCTGGTGGTGACAGTGCTGATGGGGACAGTGCTGATGGTGACAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCTGGTGGTGACAGTGCTGATGGGGACAGTGCTGATGGTGACAGT  871

seq1  GCTGATGGTGACAGTGCTGATGGTGACAGTGCTGATGGTGACAGTGCTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGGTGACAGTGCTGATGGTGACAGTGCTGATGGTGACAGTGCTGA  921

seq1  TGGGGACAGTGCTGATGGGGACAGTGCTGATGGTGACAGTGCTGATGGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACAGTGCTGATGGGGACAGTGCTGATGGTGACAGTGCTGATGGGG  971

seq1  ACAGTGCTGATGGTGACAGATGTCTGCACGTATCTGTATGCCTTTGTTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCTGATGGTGACAGATGTCTGCACGTATCTGTATGCCTTTGTTGT  1021

seq1  ATATGGGAAGGTCAGGAGTGTCTGCTGATTCCATTGTGTGGGTGTCATGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGAAGGTCAGGAGTGTCTGCTGATTCCATTGTGTGGGTGTCATGT  1071

seq1  CCAGGACAGGCTTTCTGATGAAGCCTTAGACTGTGTTGAAATGGTCTCAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACAGGCTTTCTGATGAAGCCTTAGACTGTGTTGAAATGGTCTCAA  1121

seq1  AGGGAGACATTCACAGTGCCCAATGTTGACAGCAGAATAACACTTTCTCC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGACATTCACAGTGCCCAATGTTGACAGCAGAATAACACTTTCTCC  1171

seq1  AGATGAGGAATTC  1212
      |||||||||||||
seq2  AGATGAGGAATTC  1184