BAC Information

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BAC

Clone NameB6Ng01-011H09
Chromosome15 (Build37)
Map Location 23,707,429 - 23,708,443
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh18, LOC624863
Downstream geneLOC666989, LOC666999, LOC100040492, LOC100040499
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011H09.bB6Ng01-011H09.g
ACCDH846839DH846840
length8311,007
definitionDH846839|Mus musculus domesticus DNA, BAC clone: B6Ng01-011H09, 5' end.DH846840|Mus musculus domesticus DNA, BAC clone: B6Ng01-011H09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttagatattttgaatattagtcctctactggatgtggggttag
ggaacttttttcccaagctgaagggctcaactgaggacacttcagtccta
cttgggaggaagaagaaagcaatcacagggtgcagaggaaggaagggaca
gggaggggaaaaggggaacaggatcagatattcttggggtgggatcaaga
gtgaagccctgagggccagcagaaagaatggaaacaggcaagctcaggag
gtaggaggtggcaccaaagacctgggaggtgagagatggtcaggactcag
agggagggcctaatgatgaaatgcccaacagtggggagaggaaaattata
gagtccaccaccagtagaaggacagggcatcaagtggaggaatggggtta
ctatatcacagtcacaattctgacaatgggatccatctctggggtgttgt
aaggcctgatgcaatggtatgctgacagacaggagtctagcatggcagct
ctccctgaggcccaactagaacctcaaagaaccagatgtaaatacttaca
cccaaaaagtggaaagaagctagggtcacctgtgtttgaaatagggaaag
actggaagaacctgaggaggagggcaacccaataagatgaccagcagtct
cagctagcatggacccctgagatctctcagacactgagccaccaaccata
tactagctgatatgaggactctgatacatatacagctgatgagtctggcc
tgagtttaaaaaaaagcatctaaaccctaaagagttaaaggcccaagggg
agaagacaatgttttgggggtgggagttgga
gaattcataggagtccaacatagttgacagcgttgttactcttatggggt
tataggggtccagacctccctgcaacgcttggctatatctacatctttct
cagctgcttttagtacccatcagagggcaaccatgttaggcttgtgtcta
aagacaaaacaaaacattagtaataatgtcagggtttggtgcccattcaa
ggaaaggatcctgaattgggatggtcactggtcagctattccttcagtct
cttcttcttttttgtcccagcatttcttttagacatgggcacttttgaag
taatgtccattcttaactgctcctggttcctcctgtattagacattttaa
gtttttttttttttttttttttttttttttttttttagtgatatagcaaa
atatgccaaaagaacaacttttaagggagggaaaatttatattgctgcag
aattagatgtctcagcctatggatgccgggctccattgcattacaatctt
cattgtcaagatgacttgttactccccttccccacacacacacacatgca
agtgcactgaaggatcaatggagttacagatgtgagctatttgtcttatc
tggatttacattatttttaaactcagaccttcacactgggggagagtgca
ctttattcattgaattagctcattaccaccaatgttcatgtatttttact
aaatcaattcatatatttaagtatgcttctaacacttctacagagatatt
attttcaccatgtaaaaacaggagggcagagcaattctgaaattgtgcat
agtacacattaggaaaatcaaaattttaaaagtatagattgttattttgg
agctttaaaaatacattgaagtatcctaatccctatatctcctcaataca
ttcctcctttccctccaactctttttttgccacattaaaaacaatgatgt
ttgttcacttatgttcataacacttagtcataatacagccaactgggaac
acctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_23707429_23708443
seq2: B6Ng01-011H09.g_68_1074 (reverse)

seq1  TCTAGGTTGTTCCCAGTTTGCTGGTATTATGAATAAAGCTGCTATGAACA  50
      |||||| ||||||||||| ||| ||||||||| |||   || ||||||||
seq2  TCTAGG-TGTTCCCAGTTGGCT-GTATTATGACTAA--GTGTTATGAACA  46

seq1  TAGTGGAACAAACATCATTGTTTTTAATGTGGCAAAAAATGAGTTGGAGG  100
      ||   |||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAGTGAACAAACATCATTGTTTTTAATGTGGCAAAAAAAGAGTTGGAGG  96

seq1  G-AAGGGGGAATTGATTGAGGAAGATATAGGGATGAGTATACTCAAAATG  149
      | |||| |||||  ||||||| |||||||||||| || |||||   ||||
seq2  GAAAGGAGGAATGTATTGAGG-AGATATAGGGATTAGGATACT-TCAATG  144

seq1  TATTTTATAAAGCT-CAAAATAACAATCTATACTTTTTAAAATTTTGATT  198
      |||||| ||||||| |||||||||||||||||| ||||||||||||||||
seq2  TATTTT-TAAAGCTCCAAAATAACAATCTATAC-TTTTAAAATTTTGATT  192

seq1  TTCCTTAATGTGTACTATGCACAATTTCAGAATTGCTCTGCCCTCCTGTT  248
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCC-TAATGTGTACTATGCACAATTTCAGAATTGCTCTGCCCTCCTGTT  241

seq1  TTTACATTGGTGAAAATAATATCTCTGTAGAAGTGTTAGAAGCATACTTA  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACA-TGGTGAAAATAATATCTCTGTAGAAGTGTTAGAAGCATACTTA  290

seq1  AATATATGAATTGATTTAGTAAAAATACATGAACATTGGTGGTAATGAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGAATTGATTTAGTAAAAATACATGAACATTGGTGGTAATGAGC  340

seq1  TAATTCAATGAATAAAGTGCACTCTCCACCAGTGTGAAGGTCTGAGTTTA  398
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TAATTCAATGAATAAAGTGCACTCTCCCCCAGTGTGAAGGTCTGAGTTTA  390

seq1  AAAATAATGTAAATCCAGATAAGACAAATAGCTCACATCTGTAACTCCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATGTAAATCCAGATAAGACAAATAGCTCACATCTGTAACTCCAT  440

seq1  TGATCCTTCAGTGCACTTGCATGTGTGTGTGTGTGGGGAAGGGGAGTAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTTCAGTGCACTTGCATGTGTGTGTGTGTGGGGAAGGGGAGTAAC  490

seq1  AAGTCATCTTGACAATGAAGATTGTAATGCAATGGAGCCCGGCATCCATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATCTTGACAATGAAGATTGTAATGCAATGGAGCCCGGCATCCATA  540

seq1  GGCTGAGACATCTAATTCTGCAGCAATATAAATCTTCCCTCCCTTAAAAG  598
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGCTGAGACATCTAATTCTGCAGCAATATAAATTTTCCCTCCCTTAAAAG  590

seq1  TTGTTCATCTGGCATATTTTGCTATATCACTAAAAAAAAAAAAAAAAAAA  648
      |||||| | |||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTTTGGCATATTTTGCTATATCACTAAAAAAAAAAAAAAAAAAA  640

seq1  AAAAAAAAAAAAAAAACTTAAAATGTCTAATACAGGAGGAACCAGGAGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAACTTAAAATGTCTAATACAGGAGGAACCAGGAGCA  690

seq1  GTTAAGAATGGACATTACTTCAAAAGTGCCCATGTCTAAAAGAAATGCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAATGGACATTACTTCAAAAGTGCCCATGTCTAAAAGAAATGCTG  740

seq1  GGACAAAAAAGAAGAAGAGACTGAAGGAATAGCTGACCAGTGACCATCCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAAAAAGAAGAAGAGACTGAAGGAATAGCTGACCAGTGACCATCCC  790

seq1  AATTCAGGATCCTTTCCTTGAATGGGCACCAAACCCTGACATTATTACTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGGATCCTTTCCTTGAATGGGCACCAAACCCTGACATTATTACTA  840

seq1  ATGTTTTGTTTTGTCTTTAGACACAAGCCTAACATGGTTGCCCTCTGATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGTTTTGTCTTTAGACACAAGCCTAACATGGTTGCCCTCTGATG  890

seq1  GGTACTAAAAGCAGCTGAGAAAGATGTAGATATAGCCAAGCGTTGCAGGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTAAAAGCAGCTGAGAAAGATGTAGATATAGCCAAGCGTTGCAGGG  940

seq1  AGGTCTGGACCCCTATAACCCCATAAGAGTAACAACGCTGTCAACTATGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGGACCCCTATAACCCCATAAGAGTAACAACGCTGTCAACTATGT  990

seq1  TGGACTCCTATGAATTC  1015
      |||||||||||||||||
seq2  TGGACTCCTATGAATTC  1007