BAC Information

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BAC

Clone NameB6Ng01-012B23
Chromosome4 (Build37)15 (Build37)
Map Location 10,665,301 - 10,665,92057,980,376 - 57,980,435
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGdf6, 4930448K20Rik, LOC666840
Downstream gene1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012B23.bB6Ng01-012B23.g
ACCDH847298DH847299
length998950
definitionDH847298|Mus musculus domesticus DNA, BAC clone: B6Ng01-012B23, 5' end.DH847299|Mus musculus domesticus DNA, BAC clone: B6Ng01-012B23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,665,301 - 10,665,920)(57,980,376 - 57,980,435)
sequence
gaattcttctggctagaacttcaagtgctatattgaataggtagagagaa
agtgggcagccttttctagtccctgattttagtgggattgcttccagctt
ctcaccatttactttgatgttggctactggtttgctgtagattgctttca
ttatgtttgggtatgaattcctgatctttccaaaacttttatcatgaagg
ggtgttggattttgtcaaatgctttctcagcatctaattagatgatcatg
tggtttttgtctttgagttgtttatgtactggattacattgatggatttc
catatattaaaccattcttgcatccatgggatgaagcctacttggtcatg
agggatgatcattttgatgtgttcttggatttgttttgagaggatttttt
tagtatttttgcttcgatattcataagggaaaatggtctgaagttctctt
tctttgttggatctttgtgtggtttaggtatcagagtaattgtagcttca
tagaatgaatttggtagagtaccttctgtttctattttgtggaatagagt
gagaagagttggaattaggtcttctttgaaggtctgatagaactctgcac
tgaacccatctggtcttgggctttttttggtttggggactattgatgact
gcttctatttctttagcagaaataggactgtttagatccttaatccgatc
caaatttaactttggtacctggtatttgtctaggaagttgtccatttcat
ccaggttttctagttttgttgactatagccttttgtagtaggatatgatg
atgttttggatttccaaaggatctgttattatgtctcctttttcatttct
gcttttgttaattaggatattctccctgtgctctttagtgagtctggcta
aggatttatcggtcttgttgattttctcaaagaccagctcctgggttggt
tgattcattgatagttctttttgttccactggctaattcaccctgagt
gaattctttgttaagatcatttgtccaagcttggcagtgttggcacatgc
ccttaatcccaatacttgggaggcagaggcaggctgatttttgagttcga
ggccagcctggtttactgagtgagttataggtcagccagagctacagaca
agaaccctttctcgaaaaaccaaccaaccaaccaaccaaccaaccaacca
accaaccaaccaaccaaccaaaaaagagatcactggtccgttttgttgtt
gttgttgttgttattttctgtttttaaaaattgtatttaatccttttttt
ttcactccagagtttatcccctgccaggaccaccctctgtgccccattcc
aaacccctcccacctcctatctccacaaggatgttcccatccccacctgc
ccaccttaccagacctcctgaatccataggtacatcttctctgactgaac
ccagaccaggcagtcctcagctgtatatgtgtgggtgtcctacaccagct
agtgaatgctgcctagttggtggtccagtgtctgagagatctctggggtc
caggttaattgagacttctggtcctcctacaggatcactctcctcctcag
tttcttccagcttttctctaattcaaccacagggggcagcatcttctgtc
cattggttgggtgtaaatatctgcatctgactttttcagctgcttgttgg
atctttcaggggatagtcatgataggtccctttttgttagcactccatag
cctcagtaataaagtcaagatttgggacctacccttgagctcgattccac
tttgggcctgttgctggacctcttttacttcaggttcctctccatttcca
tccctgtagttctttccgacaggatcaactatgggtcagagttttgactg
tgggatgtcaaccgcactcctcatttgatgccctatttcctgctgagatg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_10665301_10665920
seq2: B6Ng01-012B23.b_48_658 (reverse)

seq1  CAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGAT  50
      || ||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  CAAGACCAGATGGGTTCAGTGCAGAGTTCTATCAGACCTTCAAAGAAGAC  50

seq1  CTAATTCCAGTTCTGCACAAACTATTTCACAAGATAGAAGTAGAAGGTAC  100
      |||||||||  ||| | ||  ||||| ||||| ||||||  |||||||||
seq2  CTAATTCCAACTCTTCTCACTCTATTCCACAAAATAGAAACAGAAGGTAC  100

seq1  TCTACCCAACTCATTTTATGAAGCCACTATTACTCTGATACCTAAACCAC  150
      |||||| || ||||| |||||||| || ||||||||||||||||||||||
seq2  TCTACCAAATTCATTCTATGAAGCTACAATTACTCTGATACCTAAACCAC  150

seq1  AGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAAT  200
      | |||||||||||||||| |||||||||||||||| |||| |||||||||
seq2  ACAAAGATCCAACAAAGAAAGAGAACTTCAGACCATTTTCCCTTATGAAT  200

seq1  ATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACA  250
      ||||| |||||||| | ||| ||||| ||| | || | ||||||||||||
seq2  ATCGAAGCAAAAATAC-TAAAAAAATCCTCTCAAAACAAATCCAAGAACA  249

seq1  CATTAAAGAAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGC  300
      ||| |||   ||||||| || |||||||||||| || || ||| ||||||
seq2  CATCAAAATGATCATCCCTCATGACCAAGTAGGCTTCATCCCATGGATGC  299

seq1  AGGGATGGTTTAATATACGAAAATCCATCAATGTAATCCATTATATAAAC  350
      | | ||||||||||||| | |||||||||||||||||||| || ||||||
seq2  AAGAATGGTTTAATATATGGAAATCCATCAATGTAATCCAGTACATAAAC  349

seq1  AAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCAGAAAAAGC  400
       ||||||||||||||||||||||||||||||  |||||||| || |||||
seq2  -AACTCAAAGACAAAAACCACATGATCATCTAATTAGATGCTGAGAAAGC  398

seq1  ATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTTGGAAAGATCAG  450
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  ATTTGACAAAATCCAACACCCCTTCATGATAAAAGTTTTGGAAAGATCAG  448

seq1  GAATTCAAGGCCCATACCTAAACATAATAAAAGCAATCTACAGCAAACCA  500
      |||||       |||||| ||||||||| |||||||||||||||||||||
seq2  GAATT-------CATACCCAAACATAATGAAAGCAATCTACAGCAAACCA  491

seq1  GTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAA  550
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTAGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTAAA  541

seq1  ATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAG  600
      ||||||||||||| |||||||||||||||||| |||||| ||||| ||||
seq2  ATCAGGGACTAGAAAAGGCTGCCCACTTTCTCTCTACCTATTCAATATAG  591

seq1  TACTTGAAGTATTAGCCAGA  620
       |||||||||  ||||||||
seq2  CACTTGAAGTTCTAGCCAGA  611

seq1: chr15_57980376_57980435
seq2: B6Ng01-012B23.g_117_176

seq1  TTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGG  50
      |||||||||  ||| ||||||||||||||||| ||||| |||||||||||
seq2  TTAATCCCAATACTTGGGAGGCAGAGGCAGGCTGATTTTTGAGTTCGAGG  50

seq1  CCAGCCTGGT  60
      ||||||||||
seq2  CCAGCCTGGT  60