BAC Information

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BAC

Clone NameB6Ng01-021A11
Chromosome15 (Build37)
Map Location 91,352,270 - 91,511,076
singlet/doubletdoublet
Overlap geneSlc2a13, Lrrk2
Upstream geneCpne8, EG627342, LOC100042462, LOC100042471, EG667682, Tcea1-ps1, Spn-ps, Kif21a, EG635871, Abcd2, LOC545126
Downstream geneMuc19, Smgc, LOC100042529, Cntn1, Pdzrn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021A11.bB6Ng01-021A11.g
ACCDH853655DH853656
length1,042867
definitionDH853655|Mus musculus domesticus DNA, BAC clone: B6Ng01-021A11, 5' end.DH853656|Mus musculus domesticus DNA, BAC clone: B6Ng01-021A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,510,015 - 91,511,076)(91,352,270 - 91,353,135)
sequence
gaattcagtttttcacaaaacatatttttctcaaggaaagtagcattgag
ggtaaggaatcctgataattgtggccctaggtatgagatcacctaatggc
agaagatacttttataaatgtccagaaactattttctttttaaagaattt
tcttagaaacaattttttgttcaaacttcttacctaattatgtctataaa
tgaggtctcattaaggacattatgcagaaagcagcagccatatcattgtt
cagaagtcaccagactagggtgcagtgggctgagaaagaataaatttcct
ctttcttattcctcctgaaagccaccgtctctgttcactgacattagcac
acacacatgtatgcaaattgcacaagaagacagtagagcgtaactttgaa
acaagtggttacagaactaacttcttggttgtcatgttctttaaagatta
tatcagtttcactattactaataaaaagcctgtttggattcatcttaagt
ggtactaaaatatctacaatttaaccatttatgtaactgtatatctgtgt
tactaaaatcacctcacctggtcctttaccatcagtaatagttttctagc
tcacaagtaaagtttaaagatctctataaatataagtcattgatgtaaga
aaaaaaatatccacttcgaaggaattttgcagaatggttttggatgaaca
atgattatcacatataatttttcaatgcagtttatcttcacgtatctatc
acacttaccggtgaataccaaggacttcccaatcatttccaatatcctgg
ggtcctataagctttgcaatgtccctggacagacttctataattgcacag
aagtgaccaccccgcctgaaaataagaaaggtaagatttgacctttttgt
ttaaaggtatatttcaatttccccggctatccttcaacatggtagccaag
agcgagctcgacctctgatcccctctctccacatgtaaagcctgaataca
tccagacacacgtcagtgggtggtgacagtgagcgtgattga
gaattctacaccgagaacctgcctgtcccttgaataccacaggccagccc
taaatgtcactctatccacaggaatgtagaaaacggaaaacaaagacacc
aagctgtagagacagtcacaaagctcggctttgcttcagaaaatacccca
gatgttaatgtcaaagtggttttggaggctcctgtcctcaattttgttaa
atgctatccaagcaccaagggacacacctctgcttagaacatggccctta
ggaaatatctcagagacactttaaccgaaggaggtcttctctcttcccca
cacccactcctgcctgtgtgaggtcctgggaacaggcatcttgattaggt
cagcctttaagaataatgggaacacatgaaactcaagaagaacgaagacc
aaagtgtggacactttgccccttcttagaactgggaacaaaacacccatg
gaaggagttacagagacaaagtttggagctgagacgaaaggatggaccat
ctagaaactgccatatccggggatccatcccataatcagcttccaaacgc
tgacaccattgcatacactagcaagattttgctgaaaggacccagatata
gttgtctctttgtgagactatgcttgggcctagcaaacacagaagtggat
gctcacagtcagctatttggatggatcacagggcccccaatggaggagct
agagaaagtacccaaggagctaaaggaatctgcaaccatataggtggacc
acaatatgaactaaccagtacccctggagctcgtgtctctagctgcatat
gtatcagaagatggcctatttggccttcagtggtaagagaggcccattgg
tcatgcaaactttatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_91510015_91511076
seq2: B6Ng01-021A11.b_43_1084 (reverse)

seq1  TCAATCACGCTCACTGTCACCACCCAAACTGGACGTGGTGGTCTGTGATT  50
      |||||||||||||||||||||||||  ||| ||||||   ||||| || |
seq2  TCAATCACGCTCACTGTCACCACCC--ACT-GACGTG--TGTCTG-GA-T  43

seq1  GTAATTCCAGGGCTTTACATGTGGAGAGAGGGGGATCAGAAGGTCGAGCT  100
      || ||||   ||||||||||||||||||| ||||||||| ||||||||||
seq2  GT-ATTC--AGGCTTTACATGTGGAGAGA-GGGGATCAG-AGGTCGAGCT  88

seq1  CGCTCTTGGCTACCATGTTGAAGGATAGCCGGGGATATATGAAATATTAC  150
      ||||||||||||||||||||||||||||||||||| || ||||||| |||
seq2  CGCTCTTGGCTACCATGTTGAAGGATAGCCGGGGAAAT-TGAAATA-TAC  136

seq1  CTTTTAAACAAAAAAGGTCAAATCTTTACCTTTCTTATTTTCAGGCGGGG  200
      | ||||||| |||||||||||||| |||||||||||||||||||||||||
seq2  C-TTTAAAC-AAAAAGGTCAAATC-TTACCTTTCTTATTTTCAGGCGGGG  183

seq1  TGGTCACTTCTGTGCAAATTAATAGAAGTCTGTCCAGGGACATTGCAAAG  250
      |||||||||||||||||  | |||||||||||||||||||||||||||||
seq2  TGGTCACTTCTGTGCAA--TTATAGAAGTCTGTCCAGGGACATTGCAAAG  231

seq1  CTTAATAGGACCCCAGGATATTGGAAATGATTGGGAAGTCCTTGGTATTC  300
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTT-ATAGGACCCCAGGATATTGGAAATGATTGGGAAGTCCTTGGTATTC  280

seq1  ACCGGTAAGTGTGATAGATACGTGAAGATAAACTGCATTGAAAAATTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGTAAGTGTGATAGATACGTGAAGATAAACTGCATTGAAAAATTATA  330

seq1  TGTGATAATCATTGTTCATCCAAAACCATTCTGCAAAATTCCTTCGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAATCATTGTTCATCCAAAACCATTCTGCAAAATTCCTTCGAAGT  380

seq1  GGATATTTTTTTTCTTACATCAATGACTTATATTTATAGAGATCTTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTTTTTTTCTTACATCAATGACTTATATTTATAGAGATCTTTAAA  430

seq1  CTTTACTTGTGAGCTAGAAAACTATTACTGATGGTAAAGGACCAGGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTTGTGAGCTAGAAAACTATTACTGATGGTAAAGGACCAGGTGAG  480

seq1  GTGATTTTAGTAACACAGATATACAGTTACATAAATGGTTAAATTGTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTTAGTAACACAGATATACAGTTACATAAATGGTTAAATTGTAGA  530

seq1  TATTTTAGTACCACTTAAGATGAATCCAAACAGGCTTTTTATTAGTAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGTACCACTTAAGATGAATCCAAACAGGCTTTTTATTAGTAATA  580

seq1  GTGAAACTGATATAATCTTTAAAGAACATGACAACCAAGAAGTTAGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACTGATATAATCTTTAAAGAACATGACAACCAAGAAGTTAGTTCT  630

seq1  GTAACCACTTGTTTCAAAGTTACGCTCTACTGTCTTCTTGTGCAATTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCACTTGTTTCAAAGTTACGCTCTACTGTCTTCTTGTGCAATTTGC  680

seq1  ATACATGTGTGTGTGCTAATGTCAGTGAACAGAGACGGTGGCTTTCAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTGTGTGTGCTAATGTCAGTGAACAGAGACGGTGGCTTTCAGGA  730

seq1  GGAATAAGAAAGAGGAAATTTATTCTTTCTCAGCCCACTGCACCCTAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAGAAAGAGGAAATTTATTCTTTCTCAGCCCACTGCACCCTAGTC  780

seq1  TGGTGACTTCTGAACAATGATATGGCTGCTGCTTTCTGCATAATGTCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACTTCTGAACAATGATATGGCTGCTGCTTTCTGCATAATGTCCTT  830

seq1  AATGAGACCTCATTTATAGACATAATTAGGTAAGAAGTTTGAACAAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGACCTCATTTATAGACATAATTAGGTAAGAAGTTTGAACAAAAAA  880

seq1  TTGTTTCTAAGAAAATTCTTTAAAAAGAAAATAGTTTCTGGACATTTATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTAAGAAAATTCTTTAAAAAGAAAATAGTTTCTGGACATTTATA  930

seq1  AAAGTATCTTCTGCCATTAGGTGATCTCATACCTAGGGCCACAATTATCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATCTTCTGCCATTAGGTGATCTCATACCTAGGGCCACAATTATCA  980

seq1  GGATTCCTTACCCTCAATGCTACTTTCCTTGAGAAAAATATGTTTTGTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCTTACCCTCAATGCTACTTTCCTTGAGAAAAATATGTTTTGTGA  1030

seq1  AAAACTGAATTC  1062
      ||||||||||||
seq2  AAAACTGAATTC  1042

seq1: chr15_91352270_91353135
seq2: B6Ng01-021A11.g_62_928

seq1  GAATTCTACA-TGAGAACCTGCCTGTCCCTTGAATACCACAGGCCAGCCC  49
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACCGAGAACCTGCCTGTCCCTTGAATACCACAGGCCAGCCC  50

seq1  TAAATGTCACTCTATCCACAGGAATGTAGAAAACGGAAAACAAAGACACC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTCACTCTATCCACAGGAATGTAGAAAACGGAAAACAAAGACACC  100

seq1  AAGCTGTAGAGACAGTCACAAAGCTCGGCTTTGCTTCAGAAAATACCCCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTAGAGACAGTCACAAAGCTCGGCTTTGCTTCAGAAAATACCCCA  150

seq1  GATGTTAATGTCAAAGTGGTTTTGGAGGCTCCTGTCCTCAATTTTGTTAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAATGTCAAAGTGGTTTTGGAGGCTCCTGTCCTCAATTTTGTTAA  200

seq1  ATGCTATCCAAGCACCAAGGGACACACCTCTGCTTAGAACATGGCCCTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATCCAAGCACCAAGGGACACACCTCTGCTTAGAACATGGCCCTTA  250

seq1  GGAAATATCTCAGAGACACTTTAACCGAAGGAGGTCTTCTCTCTTCCCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATATCTCAGAGACACTTTAACCGAAGGAGGTCTTCTCTCTTCCCCA  300

seq1  CACCCACTCCTGCCTGTGTGAGGTCCTGGGAACAGGCATCTTGATTAGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTCCTGCCTGTGTGAGGTCCTGGGAACAGGCATCTTGATTAGGT  350

seq1  CAGCCTTTAAGAATAATGGGAACACATGAAACTCAAGAAGAACGAAGACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTTAAGAATAATGGGAACACATGAAACTCAAGAAGAACGAAGACC  400

seq1  AAAGTGTGGACACTTTGCCCCTTCTTAGAACTGGGAACAAAACACCCATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTGGACACTTTGCCCCTTCTTAGAACTGGGAACAAAACACCCATG  450

seq1  GAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACGAAAGGATGGACCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACGAAAGGATGGACCAT  500

seq1  CTAGAAACTGCCATATCCGGGGATCCATCCCATAATCAGCTTCCAAACGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAACTGCCATATCCGGGGATCCATCCCATAATCAGCTTCCAAACGC  550

seq1  TGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCAGATATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCAGATATA  600

seq1  GTTGTCTC-TTGTGAGACTATGCTTGGGCCTAGCAAACACAGAAGTGGAT  648
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTCTTTGTGAGACTATGCTTGGGCCTAGCAAACACAGAAGTGGAT  650

seq1  GCTCACAGTCAGCTA-TTGGATGGATCACAGGGCCCCCAATGGAGGAGCT  697
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTCACAGTCAGCTATTTGGATGGATCACAGGGCCCCCAATGGAGGAGCT  700

seq1  AGAGAAAGTACCCAAGGAGCTAAAGGAATCTGCAACCATATAGGTGGAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGAGAAAGTACCCAAGGAGCTAAAGGAATCTGCAACCATATAGGTGG-AC  749

seq1  AACAATATGAACTAACCAGTACCCCCTGGAGCTCGTGTCTCTAGCTGCAT  797
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CACAATATGAACTAACCAGTA-CCCCTGGAGCTCGTGTCTCTAGCTGCAT  798

seq1  ATGTATCAGAAGATGGCCTAGTTGGCCATCAGTGGAAAGAGAGGCCCATT  847
      |||||||||||||||||||| |||||| ||||||| ||||||||||||||
seq2  ATGTATCAGAAGATGGCCTATTTGGCCTTCAGTGGTAAGAGAGGCCCATT  848

seq1  GGTCATGCAAACTTTATAT  866
      |||||||||||||||||||
seq2  GGTCATGCAAACTTTATAT  867