BAC Information

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BAC

Clone NameB6Ng01-021O01
Chromosome15 (Build37)
Map Location 53,275,541 - 53,276,680
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039748, Thrap6, LOC100039745, Ext1
Downstream geneSamd12, EG665097, EG621631, Tnfrsf11b, LOC665280, EG383032, Colec10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021O01.bB6Ng01-021O01.g
ACCDH854264DH854265
length1,2191,198
definitionDH854264|Mus musculus domesticus DNA, BAC clone: B6Ng01-021O01, 5' end.DH854265|Mus musculus domesticus DNA, BAC clone: B6Ng01-021O01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagagacaattcttgagtaaattaaagaaactcacctgagttccc
gacacatctgggagactagtaacagaagaaagttgagacagaagggatgg
acaatgttagactgagtttggaaagaattgaagcctctgagggcaggccc
actgttcgaagggaagggaatattctagaaagacagcagtgaaataggct
acaaccagtgcattttctctggccagagatctccagagtctggagggcaa
agatagtccagggatgtgcctcctctggcacagagccagacagtgaatag
aagaatagaaggcataggtataaagaatgaaaataatgtgtacgtttggt
gggaggcaggggagaatcatggagataatttatgctaccaaaaaaaaagt
atcctaaacgaggtagcaaacacatggtccactgtgttcatagcagcttt
atttataatagccagaagctggaaagaatccagatatcctttaacagagg
aatggatacagaaaatgtggtacatttacacaatggagtactactcagct
attaaaaacaatgactttatgaactttgtaggcgaatggatggaactaga
aaatatcatcccgagcgaggtaacccaatcacaaaagaacgcacatggta
ttcactcagggatgagtggatattagcccataagcatggaatacccaaat
acaattcacagacctcatgaatgtcaaggatgaagaccaaagtgtgggtg
cttcggttcttcttagaaggggaaacaaaatactcacaggaggaaatata
gagacaaaatgtggagcagagactgaattaaatgccatccagagactgac
tcacctggggaatccatcccatatacagtcaccaaacccagacaatattg
aggatggcagaagtgcatgttgaaaggagcctgatatagctatctcctga
gaggctctgccagtgcctgacaattacagaggcgatgctagcagccactt
tggactgagcatggcgtcccatggaggagtagagaaagactgaggagctg
agtggttgcaacccctaggaggacacatatcacaacggaccccccctcga
actcaggactaaacaccaagcaggatacacttggaggaccatggctccgc
acgctatggacagatatcgtccaggataatggaatgaagagtgcctggtc
ctacaagccgcagtatgca
gaattcttgtgagcctcctctgtgatggaggcctcaaaaaggctctgtac
tggaagattttgtatgtgaacttgacacaagctaaagacatcagagagaa
ggaccctcagttgacaaaaatgcctctatgagatccagctatagggcatt
ttctcaatgaatgatcagtgggagagggctcaacccaggatgggtggtgc
catcccaggatggtgtcctgagttctataaggagactgaggaggccatgg
gaagcaagccagcaagcatccatggcatcttcatcagctcctgcctccag
gatcctgccctgtttgagttcctgtcccaactctctcaataaaaatcagc
aatatggaagtgcaaactgaataaatccttttctccccagcttgcttttt
gtttatgtcattttgttgcagcaatagaaaccctaactgagacaggtacc
aaacagcatttctttctacctttgacaccttaactatagttggctctggt
gaatcacatggcttaagctcacataacagcctggacctggtaaagagcct
tctcttgcttcaagacccatttgaagctaatcctttggagaaacatgact
caagtgtaattggtataagtcaaagataccaattagtaatagtacctatt
aaagagtttgatgtagtacattacacacagacctatgatcccacccagcc
tgcccctttgctctattccttagctctctcttagctctcaaggtaagcag
gcttaggagactcacactttctaatgagtcacggctgttgttgtttaatg
cccattcctccaactgtttcatgatcatggaatccatgttttccagatat
cagtacttcctatattattgcacatgagtactctaaagagggaaatccac
caaccagagctgggtgtagtatacatgcaaatatccacgcttgctgtgat
accaattacagtttcagttttatacttctgttgttttcgttttgtaacca
tagcattatttaacccatattgatgactgctaccttttatcccatcttgg
gtattctgagcctctgttttatggcttcatttctcaacctgtaaggaaat
ataatgctgagacaagcccacctggaatgttaactggctttcttgctgct
gtgcccacctgaattccggaattcttgtcgtcaactgaggcatgcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_53275541_53276680
seq2: B6Ng01-021O01.g_145_1263

seq1  AGCTAAAGACATCAGAGAGAAGGACCCTCAGTTGACAAAAATGCCTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAGACATCAGAGAGAAGGACCCTCAGTTGACAAAAATGCCTCTAT  50

seq1  GAGATCCAGCTATAGGGCATTTTCTCAATGAATGATCAGTGGGAGAGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCAGCTATAGGGCATTTTCTCAATGAATGATCAGTGGGAGAGGGC  100

seq1  TCAACCCAGGATGGGTGGTGCCATCCCAGGATGGTGTCCTGAGTTCTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCAGGATGGGTGGTGCCATCCCAGGATGGTGTCCTGAGTTCTATA  150

seq1  AGGAGACTGAGGAGGCCATGGGAAGCAAGCCAGCAAGCATCCATGGCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTGAGGAGGCCATGGGAAGCAAGCCAGCAAGCATCCATGGCATC  200

seq1  TTCATCAGCTCCTGCCTCCAGGATCCTGCCCTGTTTGAGTTCCTGTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAGCTCCTGCCTCCAGGATCCTGCCCTGTTTGAGTTCCTGTCCCA  250

seq1  ACTCTCTCAATAAAAATCAGCAATATGGAAGTGCAAACTGAATAAATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCAATAAAAATCAGCAATATGGAAGTGCAAACTGAATAAATCCT  300

seq1  TTTCTCCCCAGCTTGCTTTTTGTTTATGTCATTTTGTTGCAGCAATAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCCAGCTTGCTTTTTGTTTATGTCATTTTGTTGCAGCAATAGAA  350

seq1  ACCCTAACTGAGACAGGTACCAAACAGCATTTCTTTCTACCTTTGACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAACTGAGACAGGTACCAAACAGCATTTCTTTCTACCTTTGACACC  400

seq1  TTAACTATAGTTGGCTCTGGTGAATCACATGGCTTAAGCTCACATAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTATAGTTGGCTCTGGTGAATCACATGGCTTAAGCTCACATAACAG  450

seq1  CCTGGACCTGGTAAAGAGCCTTCTCTTGCTTCAAGACCCATTTGAAGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACCTGGTAAAGAGCCTTCTCTTGCTTCAAGACCCATTTGAAGCTA  500

seq1  ATCCTTTGGAGAAACATGACTCAAGTGTAATTGGTATAAGTCAAAGATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTGGAGAAACATGACTCAAGTGTAATTGGTATAAGTCAAAGATAC  550

seq1  CAATTAGTAATAGTACCTATTAAAGAGTTTGATGTAGTACATTACACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGTAATAGTACCTATTAAAGAGTTTGATGTAGTACATTACACACA  600

seq1  GACCTATGATCCCACCCAGCCTGCCCCTTTGCTCTATTCCTTAGCTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTATGATCCCACCCAGCCTGCCCCTTTGCTCTATTCCTTAGCTCTCT  650

seq1  CTTAGCTCTCAAGGTAAGCAGGCTTAGGAGACTCACACTTTCTAATGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTCTCAAGGTAAGCAGGCTTAGGAGACTCACACTTTCTAATGAGT  700

seq1  CACGGCTGTTGTTGTTTAATGCCCATTCCTCCAACTGTTTCATGATCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCTGTTGTTGTTTAATGCCCATTCCTCCAACTGTTTCATGATCATG  750

seq1  GAATCCATGTTTTCCAGATATCAGTACTTCCTATATTATTGCACATGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCATGTTTTCCAGATATCAGTACTTCCTATATTATTGCACATGAGT  800

seq1  ACTCTAAAGAGGGAAATCCACCAACCAGAGCTGGGTGTAGTATACATGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAAGAGGGAAATCCACCAACCAGAGCTGGGTGTAGTATACATGCA  850

seq1  AATATCCACGCTTGCTGTGATAACCAATTACAGTTTCAAGTTTTATACTT  900
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  AATATCCACGCTTGCTGTGAT-ACCAATTACAGTTTC-AGTTTTATACTT  898

seq1  CTGTTGTTTTCGTTTTTGTAACCATAGCATTATCTAACCCATTATGATGA  950
      |||||||||||| |||||||||||||||||||| ||||||||  ||||||
seq2  CTGTTGTTTTCG-TTTTGTAACCATAGCATTATTTAACCCATATTGATGA  947

seq1  CTGCTACCTTTATAATCACATCTTGGTTATTCTGAGCCTCTTGTTATTAT  1000
      ||||||||||  | ||| |||||||| ||||||||||||| |||| ||||
seq2  CTGCTACCTT--TTATCCCATCTTGGGTATTCTGAGCCTC-TGTT-TTAT  993

seq1  GGGCCTCCATTTTCTC-ATCTGTAAAGTAAAAATAATAGTGCTGAGCACA  1049
      ||  || || |||||| | |||||| |   |||| ||| ||||||| || 
seq2  GG--CTTCA-TTTCTCAACCTGTAAGG---AAAT-ATAATGCTGAG-AC-  1034

seq1  AAGCACACCT-GATTGTTTTATCTGCCTTTCTTGCTTGCT-TGCCCACC-  1096
      |||| ||||| || ||  ||| ||| ||||||||| |||| |||||||| 
seq2  AAGCCCACCTGGAATG--TTAACTGGCTTTCTTGC-TGCTGTGCCCACCT  1081

seq1  GAATTCCAAGAAATTCTTGTGCTGTCAATCTATGGGCATGCTTT  1140
      |||||||  | |||||||||   |||||   |  ||||||||||
seq2  GAATTCC--GGAATTCTTGT--CGTCAACTGA--GGCATGCTTT  1119