BAC Information

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BAC

Clone NameB6Ng01-023A21
Chromosome15 (Build37)
Map Location 39,898,966 - 39,899,930
singlet/doubletsinglet
Overlap geneLOC670013
Upstream geneCthrc1, Slc25a32, Wdsof1, LOC671215, Rims2, Tm7sf4, Dpys, Lrp12, LOC100039130
Downstream geneLOC664872, Zfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023A21.bB6Ng01-023A21.g
ACCDH855084DH855085
length9541,202
definitionDH855084|Mus musculus domesticus DNA, BAC clone: B6Ng01-023A21, 5' end.DH855085|Mus musculus domesticus DNA, BAC clone: B6Ng01-023A21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttagctttacaatttctttccccggctggagcttgcaccttac
attatttaacacactttggagtactagcctctttcctcctcttaagtccc
agataagccataactaatacttaaagaattatggattcatagaatagaca
gcttaaaataaacataaagatgcttgcaattctcatggaaaataacaact
gtctattccaaggactaaaaatatgcccctagaccagagttctaaatctt
ttccaggggaagccaggctgctaagcaagttaattatattgtcctatgcg
tcagagagaaggtcacacgacgctttcaaatgcctattgcagctctttgc
attataaaaattgcactctcatcagagtaacaatcaagctatccctcttt
tggtcaccacttcctttcatgtgttcagaaactgcagctcacattccata
gcctggtgaaattaaagaagacagaaaaggaggagcagatgggtgtccag
gcaacctacttcccccacaagaagggctaggacttttctagtagaaaggt
ctggaggtgtaaccaaagatacaccttgtctaaactcaggtgccatttta
aaaagaaccacaggtcccaaccgtcaccaaactccaggtttgcagagtag
atgcacataaaatggagtctgttgttgaagaagtgtccctgtcacttgct
ttatctttaataatgagaatcttcccctattccttctccttcagccttct
tctccacagcttcctatgaatttgctctttgctcttgattggcacacttg
gctctgctgctcctctgaccccgcccccttcttctctgaatgcttccatc
tgcctgaaacaactcacataagtacttcaccttctcgatcattcactctc
cttccaatgatgaaggggaataatagctgcaggagttgcagtttggatac
ctga
gaattctcaattgaggaatacaaaatggctgagaagcccctaaagaaata
ttcaacattcttactcattagcgaaacgcaaatcaaaacaaccctgggat
tccacctcacaccagtcagaatggctaagatcataaacttaggtgacagc
agatatgggtgaggatgtgtagaaagaggaacactcctccattattggtg
ggattgcaagttggtactgccagtctggaaatcacactggtggttcctca
gaaaattggacatagtactacctgaggtcctagctataccacttctggtc
gtatacccaaaagattctcctacatataacaaggacacatactctactat
gttcatttcagccttgtttataatagccagaagctggaaagaacccagat
gtccttcaacagaggaatgggtacagaaaatgtggtacatttacacaatg
gagtactactcaactattaaaaacaatgaatttatgaaattcttcgggaa
atggatggaactagaaaatatcatcctgagtaaggtaacccagtcacaaa
agaacacacatcatatgtactcactggtaagtggatattagcccaaaagc
tcagaataaccaaaatacaattcacagaccacatgaagctcaaggagaag
gaagagcaaagtgtgggtgctttcttcttagaacgggaaacaaaatactc
ccaggagcaaatacggagacaaaatgtggaccaaagactgaaggaaaggc
catccaaagactgccccacctggggatccatcctatatacagtcaccaaa
cccagacactgttgtggatgccaagaaatgcatgctgacaggagcctgat
atagctgtctcctgagaggctctgccagagcctgacaaatacagaggtga
atgctcactggactgagcatggggtccccaatggagttcccaatggaggt
gttagagaaaggactgaagggctgagagggttgcaccccaaaggaagaac
aatatatcaaacaaccagacctcagagctccagagaactaaagcaacaac
agagtacgatggagaagacatggctttcagctatcatatgtagcaagaat
ggcttgtcaagcatcattcggaagccctgtctgtgaatgcctgatcccgt
tagaatccaagcggtggaacctcatagaacacggtgtagggtcagagaat
ag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_39898966_39899930
seq2: B6Ng01-023A21.b_39_992

seq1  GAATTCTTTAGCTTTACAATTTCTTTCCCCGGCTGGAGCTTGCACCTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGCTTTACAATTTCTTTCCCCGGCTGGAGCTTGCACCTTAC  50

seq1  ATTATTTAACACACTTTGGAGTACTAGCCTCTTTCCTCCTCTTAAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAACACACTTTGGAGTACTAGCCTCTTTCCTCCTCTTAAGTCCC  100

seq1  AGATAAGCCATAACTAATACTTAAAGAATTATGGATTCATAGAATAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGCCATAACTAATACTTAAAGAATTATGGATTCATAGAATAGACA  150

seq1  GCTTAAAATAAACATAAAGATGCTTGCAATTCTCATGGAAAATAACAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAATAAACATAAAGATGCTTGCAATTCTCATGGAAAATAACAACT  200

seq1  GTCTATTCCAAGGACTAAAAATATGCCCCTAGACCAGAGTTCTAAATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTCCAAGGACTAAAAATATGCCCCTAGACCAGAGTTCTAAATCTT  250

seq1  TTCCAGGGGAAGCCAGGCTGCTAAGCAAGTTAATTATATTGTCCTATGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGGGAAGCCAGGCTGCTAAGCAAGTTAATTATATTGTCCTATGCG  300

seq1  TCAGAGAGAAGGTCACACGACGCTTTCAAATGCCTATTGCAGCTCTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAGAAGGTCACACGACGCTTTCAAATGCCTATTGCAGCTCTTTGC  350

seq1  ATTATAAAAATTGCACTCTCATCAGAGTAACAATCAAGCTATCCCTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAAAATTGCACTCTCATCAGAGTAACAATCAAGCTATCCCTCTTT  400

seq1  TGGTCACCACTTCCTTTCATGTGTTCAGAAACTGCAGCTCACATTCCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACCACTTCCTTTCATGTGTTCAGAAACTGCAGCTCACATTCCATA  450

seq1  GCCTGGTGAAATTAAAGAAGACAGAAAAGGAGGAGCAGATGGGTGTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTGAAATTAAAGAAGACAGAAAAGGAGGAGCAGATGGGTGTCCAG  500

seq1  GCAACCTACTTCCCCCACAAGAAGGGCTAGGACTTTTCTAGTAGAAAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTACTTCCCCCACAAGAAGGGCTAGGACTTTTCTAGTAGAAAGGT  550

seq1  CTGGAGGTGTAACCAAAGATACACCTTGTCTAAACTCAGGTGCCA-TTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGGAGGTGTAACCAAAGATACACCTTGTCTAAACTCAGGTGCCATTTTA  600

seq1  AAAAGAACCACAGGTCCCAACCGTCACCAAACTCCAGGTTTGCAGAGTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACCACAGGTCCCAACCGTCACCAAACTCCAGGTTTGCAGAGTAG  650

seq1  ATGCACAT-AAATGGAGTCTGTTGTTGAAGAAGTGTCCCTGTCACTTGC-  697
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  ATGCACATAAAATGGAGTCTGTTGTTGAAGAAGTGTCCCTGTCACTTGCT  700

seq1  TTATCTTTAATAATGAGAATC-TCCCCTATTCCTTCTCCTTCAGCCTTCT  746
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTATCTTTAATAATGAGAATCTTCCCCTATTCCTTCTCCTTCAGCCTTCT  750

seq1  TCCTCCACAGCTTCCTATGAATTTGCTCTTTGCTCTTTGATTGGCACACT  796
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  T-CTCCACAGCTTCCTATGAATTTGCTCTTTGCTC-TTGATTGGCACACT  798

seq1  TGGCTCTGCCTGCTCCTCTGACCCCGCCCCCTTCTTCTCTGATTTGCCTT  846
      |||||||| |||||||||||||||||||||||||||||||||  |||  |
seq2  TGGCTCTG-CTGCTCCTCTGACCCCGCCCCCTTCTTCTCTGA-ATGC--T  844

seq1  CCCATCTGCCTGTAACCTACTCACATAAGTACTTCACCTTCTCTGATCAT  896
       ||||||||||| || | ||||||||||||||||||||||||| ||||| 
seq2  TCCATCTGCCTG-AAACAACTCACATAAGTACTTCACCTTCTC-GATCA-  891

seq1  TTCACCTCTCTCTTCAATGATGAAAGGGGAAAAAATAGGCTGCAAGGAAG  946
      |||| |||||  | ||||||||||  ||| || |||| ||||||  | ||
seq2  TTCA-CTCTCCTTCCAATGATGAA--GGGGAATAATA-GCTGCA--GGAG  935

seq1  TTGCAGTTTGGATACCTGA  965
      |||||||||||||||||||
seq2  TTGCAGTTTGGATACCTGA  954