BAC Information

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BAC

Clone NameB6Ng01-023G04
Chromosome15 (Build37)
Map Location 93,440,363 - 93,557,965
singlet/doubletdoublet
Overlap geneZfp42-ps1, LOC100042627
Upstream genePdzrn4, LOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1
Downstream geneLOC100042631, D630010B17Rik, Adamts20, Pus7l, Irak4, Twf1, Tmem117
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023G04.bB6Ng01-023G04.g
ACCDH855320DH855321
length1,0321,063
definitionDH855320|Mus musculus domesticus DNA, BAC clone: B6Ng01-023G04, 5' end.DH855321|Mus musculus domesticus DNA, BAC clone: B6Ng01-023G04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,556,921 - 93,557,965)(93,440,363 - 93,441,428)
sequence
gaattccaggacatccagggctacacagagaaaccctgtcttgaaaaacc
aaaaaaagaaaaaagaaaaaagagagagagagaaaagctaatagcactgc
ctattaccctctcctcccagcattccctgctacagcctaggactttctta
atgatgattccaaatcagcagagacaatgaaaaggcccagtttgaaatga
gatatgcattaaagcacgctctagacaatatttaatgggaaatgcatgta
cacacgattttatacaacttcatgcatattttatatgtgtgtagagtatg
ttcatattttatagtgtatgtgtgtgtatacacgtggagaaacacacata
tgcacacatacatttaaaaaaaatagtggaaggttgaggtttaggtctgc
aacttggctctccccactatctgttgagacagagtctcccacagaaccca
aagtttaccagttggctagattggctgatcattgagcttcagggatccat
ccacctgtttctaactccaccacacccctaaaaaaaagagttacaaatgt
gtgttaacacacctggcatttacatgagtgtggtatggcaaggatcggat
ctcaggtcttcattcttgtagagcaggcactttaccaactgagccatctc
tccagccctatttttcaatttgcctgtgcattgatttcatgcttgcaata
tttttacatatttatgttaaaatattaaataatttcagcagtttaatttt
agagttattttttctttattgctgagaatcgggccagtgttctatcactg
aattatatatctccaaattaatttttgatattttttatgtggatgattaa
aaacatcccaaagatattcaacatccaaatccccatttgtgtgagaaatg
cttgtattagcaccagaagagcttcttatatagatggagccaaggacact
gagataaggattcaatctacaggatgctgaggaggaaattactgcagagc
acgattgttaggttgatgagaggacagccgca
gaattcactgataggtatatggcacaatcttaagctatgccattacataa
gatttgggattgtgaatcttagcagttactctaccttccacctctacagt
gctggagacctgaacgaacccccaaaagtgttgataaattaatgagagac
tgacggaaggaaggacggatgattcttaaagagcactcttaaatttcatg
gccataaactctaccaaggagggtgaggatgacaaccgctaagagcccca
aggtttggagataaatggtcttccggaaaattctttggcaagaattccag
tcaactcgcaaagctcatctccctccacggggagtgtccacagtgaatgt
gttttgcattaccgaatgatctcgcttgtcatttgtatgcttctgctttg
gcgtcgaagtccgttactccacgcacatcaggcattcagtgagctcaggc
ttgctccgttcccacaatccctctctcttctctcctgttgtctgtgagtg
gaggccggaggcggagaagagagcggggattgtgttgctattgccctgtt
tccgtggaggacgagtgttctgggacagatggggagaaagtgacacatcc
gtgttccagagtcccgggagtgggctgtggtgtatgtgggagacctggca
aactagttcggagctaaatccaaacgttgcttgctggctgctgacttttt
gttcgggggctctaattttagacatgaatattcgaggatgggactatgtt
tcatgtatgttaaacgcatgctcagagcctttatgttggtgcctagagac
accctggggcctctcattcttcaaaacagcgttctactccggtttcacgg
ctttccagctgagctatggccctttgggcccaaggctgggatgctctctc
agccctgctaatacgggcttcttgctttgagcgggttcatcatgctcggt
tcacttctgcacgacgcttcaatttctcacatactgtttataattagaga
acacgtggctgtggtgaatataacgaacccaagaatcttacaacacccta
ggcgcttggactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_93556921_93557965
seq2: B6Ng01-023G04.b_44_1075 (reverse)

seq1  TGCGGCCTGTTCCTCCATCATCAACCTTAACATCGGTGCCTACTGCAGCT  50
      ||||| ||| |||||  ||||||||| |||||   ||||   |||||| |
seq2  TGCGG-CTG-TCCTC--TCATCAACC-TAACAATCGTGC--TCTGCAG-T  42

seq1  AATTTTCCCTCCTCAGCATCCTTGTAGTATTGGATCCCTTATCTCAGTGT  100
      |||||  |||||||||||||| ||||| |||| || ||||||||||||||
seq2  AATTT--CCTCCTCAGCATCC-TGTAG-ATTGAAT-CCTTATCTCAGTGT  87

seq1  CCTTGGCTCCATCCTATATAAGAAGGCTCTTCTGGTGCTAATAC-AGCAT  149
      |||||||||||| ||||||||||| ||||||||||||||||||| |||| 
seq2  CCTTGGCTCCAT-CTATATAAGAA-GCTCTTCTGGTGCTAATACAAGCA-  134

seq1  TTTCTCACAC-AATGGGGATTTGGATGTTG-ATATCTTTGGGATGTTTTT  197
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  TTTCTCACACAAATGGGGATTTGGATGTTGAATATCTTTGGGATGTTTTT  184

seq1  ATTCATCCACATTAAAAAATATCAAAAATTAATTTGGAGATATATAATTC  247
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATCATCCACA-TAAAAAATATCAAAAATTAATTTGGAGATATATAATTC  233

seq1  AGTGATAGAACACTGGCCCGATTCTCAGCAATAAAGAAAAAATAACTCTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATAGAACACTGGCCCGATTCTCAGCAATAAAGAAAAAATAACTCTA  283

seq1  AAATTAAACTGCTGAAATTATTTAATATTTTAACAT-AATATGTAAAAAT  346
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAATTAAACTGCTGAAATTATTTAATATTTTAACATAAATATGTAAAAAT  333

seq1  ATTGCAAGCATGAAATCAATGCACAGGCAAATTGAAAAATAGGGCTGGAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAGCATGAAATCAATGCACAGGCAAATTGAAAAATAGGGCTGGAG  383

seq1  AGATGGCTCAGTTGGTAAAGTGCCTGCTCTACAAGAATGAAGACCTGAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTCAGTTGGTAAAGTGCCTGCTCTACAAGAATGAAGACCTGAGA  433

seq1  TCCGATCCTTGCCATACCACACTCATGTAAATGCCAGGTGTGTTAACACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATCCTTGCCATACCACACTCATGTAAATGCCAGGTGTGTTAACACA  483

seq1  CATTTGTAACTCTTTTTTTTAGGGGTGTGGTGGAGTTAGAAACAGGTGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTAACTCTTTTTTTTAGGGGTGTGGTGGAGTTAGAAACAGGTGGA  533

seq1  TGGATCCCTGAAGCTCAATGATCAGCCAATCTAGCCAACTGGTAAACTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCCTGAAGCTCAATGATCAGCCAATCTAGCCAACTGGTAAACTTT  583

seq1  GGGTTCTGTGGGAGACTCTGTCTCAACAGATAGTGGGGAGAGCCAAGTTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGTGGGAGACTCTGTCTCAACAGATAGTGGGGAGAGCCAAGTTG  633

seq1  CAGACCTAAACCTCAACCTTCCACTATTTTTTTTAAATGTATGTGTGCAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTAAACCTCAACCTTCCACTATTTTTTTTAAATGTATGTGTGCAT  683

seq1  ATGTGTGTTTCTCCACGTGTATACACACACATACACTATAAAATATGAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTTTCTCCACGTGTATACACACACATACACTATAAAATATGAAC  733

seq1  ATACTCTACACACATATAAAATATGCATGAAGTTGTATAAAATCGTGTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTACACACATATAAAATATGCATGAAGTTGTATAAAATCGTGTGT  783

seq1  ACATGCATTTCCCATTAAATATTGTCTAGAGCGTGCTTTAATGCATATCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATTTCCCATTAAATATTGTCTAGAGCGTGCTTTAATGCATATCT  833

seq1  CATTTCAAACTGGGCCTTTTCATTGTCTCTGCTGATTTGGAATCATCATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAAACTGGGCCTTTTCATTGTCTCTGCTGATTTGGAATCATCATT  883

seq1  AAGAAAGTCCTAGGCTGTAGCAGGGAATGCTGGGAGGAGAGGGTAATAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTCCTAGGCTGTAGCAGGGAATGCTGGGAGGAGAGGGTAATAGG  933

seq1  CAGTGCTATTAGCTTTTCTCTCTCTCTCTTTTTTCTTTTTTCTTTTTTTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTATTAGCTTTTCTCTCTCTCTCTTTTTTCTTTTTTCTTTTTTTG  983

seq1  GTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGATGTCCTGGAATTC  1045
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGATGTCCTGGAATTC  1032

seq1: chr15_93440363_93441428
seq2: B6Ng01-023G04.g_67_1129

seq1  GAATTCACTGATAGGTATATGGCACAATCTTAAGCTATGCCATTACATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGATAGGTATATGGCACAATCTTAAGCTATGCCATTACATAA  50

seq1  GATTTGGGATTGTGAATCTTAGCAGTTACTCTACCTTCCACCTCTACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGGATTGTGAATCTTAGCAGTTACTCTACCTTCCACCTCTACAGT  100

seq1  GCTGGAGACCTGAACGAACCCCCAAAAGTGTTGATAAATTAATGAGAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGACCTGAACGAACCCCCAAAAGTGTTGATAAATTAATGAGAGAC  150

seq1  TGACGGAAGGAAGGACGGATGATTCTTAAAGAGCACTCTTAAATTTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGGAAGGAAGGACGGATGATTCTTAAAGAGCACTCTTAAATTTCATG  200

seq1  GCCATAAACTCTACCAAGGAGGGTGAGGATGACAACCGCTAAGAGCCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAAACTCTACCAAGGAGGGTGAGGATGACAACCGCTAAGAGCCCCA  250

seq1  AGGTTTGGAGATAAATGGTCTTCCGGAAAATTCTTTGGCAAGAATTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGGAGATAAATGGTCTTCCGGAAAATTCTTTGGCAAGAATTCCAG  300

seq1  TCAACTCGCAAAGCTCATCTCCCTCCACGGGGAGTGTCCACAGTGAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCGCAAAGCTCATCTCCCTCCACGGGGAGTGTCCACAGTGAATGT  350

seq1  GTTTTGCATTACCGAATGATCTCGCTTGTCATTTGTATGCTTCTGCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCATTACCGAATGATCTCGCTTGTCATTTGTATGCTTCTGCTTTG  400

seq1  GCGTCGAAGTCCGTTACTCCACGCACATCAGGCATTCAGTGAGCTCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCGAAGTCCGTTACTCCACGCACATCAGGCATTCAGTGAGCTCAGGC  450

seq1  TTGCTCCGTTCCCACAATCCCTCTCTCTTCTCTCCTGTTGTCTGTGAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCGTTCCCACAATCCCTCTCTCTTCTCTCCTGTTGTCTGTGAGTG  500

seq1  GAGGCCGGAGGCGGAGAAGAGAGCGGGGATTGTGTTGCTATTGCCCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCGGAGGCGGAGAAGAGAGCGGGGATTGTGTTGCTATTGCCCTGTT  550

seq1  TCCGTGGAGGACGAGTGTTCTGGGACAGATGGGGAGAAAGTGACACATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGGAGGACGAGTGTTCTGGGACAGATGGGGAGAAAGTGACACATCC  600

seq1  GTGTTCCAGAGTCCCGGGAGTGGGCTGTGGTGTATGTGGGAGACCTGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCAGAGTCCCGGGAGTGGGCTGTGGTGTATGTGGGAGACCTGGCA  650

seq1  AACTAGTTCGGAGCTAAATCCAAACGTTGCTTGCTGGCTGCTGACTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGTTCGGAGCTAAATCCAAACGTTGCTTGCTGGCTGCTGACTTTTT  700

seq1  GTTCGGGGGCTCTAATTTTAGACATGAATATTCGAGGATGGGACTATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGGGGGCTCTAATTTTAGACATGAATATTCGAGGATGGGACTATGTT  750

seq1  TCATGTATGTTAAACGCATGCTCAGAGCCTTTATGTTGGTGCCTAGAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTATGTTAAACGCATGCTCAGAGCCTTTATGTTGGTGCCTAGAGAC  800

seq1  ACCCTGGGGCCTCTCATTCTTCAAAACAGCGTTCTACTCCGGTTTCACGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGGGCCTCTCATTCTTCAAAACAGCGTTCTACTCCGGTTTCACGG  850

seq1  CTTTCCAGCTGAGCTATGGCCC-TTGGGCCCAAGGCTGGGATGCTCTCCC  899
      |||||||||||||||||||||| ||||||||||||||||||||||||| |
seq2  CTTTCCAGCTGAGCTATGGCCCTTTGGGCCCAAGGCTGGGATGCTCTCTC  900

seq1  AGCCCTGCTAATACGGGCTTCCTGCTTTGAGC-GGTTCATCATGCTCGGT  948
      ||||||||||||||||||||| |||||||||| |||||||||||||||||
seq2  AGCCCTGCTAATACGGGCTTCTTGCTTTGAGCGGGTTCATCATGCTCGGT  950

seq1  TCACTTCTGCAACGACGCTTCATTTTCTCAACATACCGTTTATATTTAGG  998
      |||||||||| ||||||||||| |||||| |||||| ||||||| |||| 
seq2  TCACTTCTGC-ACGACGCTTCAATTTCTC-ACATACTGTTTATAATTAGA  998

seq1  AGACACGGTGGCTGTGGTGATATGTAACAGACACACAGGAACTTTACAAC  1048
        |||| ||||||||||||| || |||| || || || |||  |||||||
seq2  GAACAC-GTGGCTGTGGTGA-ATATAAC-GA-ACCCAAGAATCTTACAAC  1044

seq1  ACCCAGGGCGC-TGGACTC  1066
      ||||  ||||| |||||||
seq2  ACCCTAGGCGCTTGGACTC  1063