BAC Information

Click to search

BAC

Clone NameB6Ng01-024K20
Chromosome15 (Build37)
Map Location 24,313,397 - 24,464,263
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC624863, LOC666989
Downstream geneLOC666999, LOC100040492, LOC100040499, LOC100040529, 9230109A22Rik, 4930445E18Rik, Basp1, EG432939, LOC100040583
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024K20.bB6Ng01-024K20.g
ACCDH856237DH856238
length5541,037
definitionDH856237|Mus musculus domesticus DNA, BAC clone: B6Ng01-024K20, 5' end.DH856238|Mus musculus domesticus DNA, BAC clone: B6Ng01-024K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,313,397 - 24,313,956)(24,463,225 - 24,464,263)
sequence
cattgtacataaccctttgattgccagctaataaatctggtagaggaagg
agaaacagtgtttaagggagggtagctggaaggggatagagggaagaaag
ctgtggggaaagtgatgcaattctatttctatcaaaacagtatttaaaaa
tatttcaaagggaccaattcttggcagctttattcatcatagtcagaaaa
tggaaagaacctatatgttcttcagccgaagaatgaataaagaaaatgtg
tcacttctacacagtggaatactattcagctattaaagcaaatacatcgt
gaattctgtaggcaaatcaatagaacttgataatattatcctgagtgagg
taacccagaacaaaaaggacatgaatggtttgtactcatttataagtaga
aattagccataaaatgcaggattccataaacccaaagaaactaaacaaga
aggaaggcccacataaattgctttattctcacttagaagggagaataaaa
tatgattataggaggcaggtggagagagggagctggatgggagaggagat
gggg
gaattcaaatattaatttgtataattcagtaattgtaataggtctgtcat
aggtttttatgatatggaaagataagactcatatgcatactcatgctggc
tactagttttaaatacatgtatcatgttttccttatgtaatagtgagaat
tcaacccagggattttacctaatatggtaaatgcactaccactgagagat
atactcagcccaattccatgggtataaatttaccttatatagagtcctat
gaactaatatatgtttttgttatttgctccaaataagcttatagataaga
gtaattgttggttactatggagatgtgagtcattccatggtcattaatgt
tggcaaaatacgtatgttacataccttatttttaattttaaaatctgctt
tcttggttactataaaatacttaactttcaagcccattatctgtgacttt
cttattatctcttatggcataattctcagaatatagaactctttaaattt
tctctttaaaattcaaacttcaagatgattcagtgtgacaaaacgcttta
caaatatgttaacgaaaagagctgctttgatgttttcaaactttatttcc
tttgtttcaggcaaactcataaacatagccttaacaaatcttcagtgaga
ttccttttctggcttacaattcacaaaatgaaacttgtgtatattgtttt
ttggtaagatggaaagtattgcttatcaaaggcattcatccagaatttct
caattttttgtaagcatttcatcataaaattctaaaacttccagagagtc
tttgcttagttttagtttttaaaatagcaaaacaatagaagtaatagatg
tattttattacatgcaaagctggttggttatgctcccttttcacgaattc
taaattgctttcctactaatttgaagctatgatttaatcactaaacttca
ttataaaggatgagcaaggtggattccaaaggcttggttcaaattcagga
tagttgggtacatggtatgtatattttaataaaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_24313397_24313956
seq2: B6Ng01-024K20.b_43_602

seq1  GAATTCCATTGTACATAACCCTTTGATTGCCAGCTAATAAATCTGGTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGTACATAACCCTTTGATTGCCAGCTAATAAATCTGGTAGA  50

seq1  GGAAGGAGAAACAGTGTTTAAGGGAGGGTAGCTGGAAGGGGATAGAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAGAAACAGTGTTTAAGGGAGGGTAGCTGGAAGGGGATAGAGGGA  100

seq1  AGAAAGCTGTGGGGAAAGTGATGCAATTCTATTTCTATCAAAACAGTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTGTGGGGAAAGTGATGCAATTCTATTTCTATCAAAACAGTATT  150

seq1  TAAAAATATTTCAAAGGGACCAATTCTTGGCAGCTTTATTCATCATAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATTTCAAAGGGACCAATTCTTGGCAGCTTTATTCATCATAGTC  200

seq1  AGAAAATGGAAAGAACCTATATGTTCTTCAGCCGAAGAATGAATAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGGAAAGAACCTATATGTTCTTCAGCCGAAGAATGAATAAAGAA  250

seq1  AATGTGTCACTTCTACACAGTGGAATACTATTCAGCTATTAAAGCAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTCACTTCTACACAGTGGAATACTATTCAGCTATTAAAGCAAATA  300

seq1  CATCGTGAATTCTGTAGGCAAATCAATAGAACTTGATAATATTATCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTGAATTCTGTAGGCAAATCAATAGAACTTGATAATATTATCCTGA  350

seq1  GTGAGGTAACCCAGAACAAAAAGGACATGAATGGTTTGTACTCATTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTAACCCAGAACAAAAAGGACATGAATGGTTTGTACTCATTTATA  400

seq1  AGTAGAAATTAGCCATAAAATGCAGGATTCCATAAACCCAAAGAAACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAATTAGCCATAAAATGCAGGATTCCATAAACCCAAAGAAACTAA  450

seq1  ACAAGAAGGAAGGCCCACATAAATTGCTTTATTCTCACTTAGAAGGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGGAAGGCCCACATAAATTGCTTTATTCTCACTTAGAAGGGAGA  500

seq1  ATAAAATATGATTATAGGAGGCAGGTGGAGAGAGGGAGCTGGATGGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATGATTATAGGAGGCAGGTGGAGAGAGGGAGCTGGATGGGAGA  550

seq1  GGAGATGGGG  560
      ||||||||||
seq2  GGAGATGGGG  560

seq1: chr15_24463225_24464263
seq2: B6Ng01-024K20.g_72_1108 (reverse)

seq1  GAATATTATATAAAATA-ACATACCATGTACCCAACTATCCTGAATTTTG  49
      |||| |||| ||||||| ||||||||||||||||||||||||||||||  
seq2  GAATTTTAT-TAAAATATACATACCATGTACCCAACTATCCTGAATTT--  47

seq1  AAACAAAGCATTTGGAATCAACCTTGCTCATCCTTTATAATTGAAGTTTA  99
       ||| |||| ||||||||| |||||||||||||||||||| |||||||||
seq2  GAACCAAGCCTTTGGAATCCACCTTGCTCATCCTTTATAA-TGAAGTTTA  96

seq1  GTGATTAAAATCATAGCTTTCAAATTAGTAGGAAAGCAATTTAGAATTCG  149
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  GTGATT-AAATCATAGC-TTCAAATTAGTAGGAAAGCAATTTAGAATTCG  144

seq1  TGAAAAGGGAGCATAACCAACCAGCTTTTGCATGTAATAAAATACATCTA  199
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGAAAAGGGAGCATAACCAACCAGC-TTTGCATGTAATAAAATACATCTA  193

seq1  TTACTTCTATTGTTTTGCTATTTTAAAAACTAAAACTAAGCAAAGACTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCTATTGTTTTGCTATTTTAAAAACTAAAACTAAGCAAAGACTCT  243

seq1  CTGGAAGTTTTAGAATTTTATGATGAAATGCTTACAAAAAATTGAG-AAT  298
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTGGAAGTTTTAGAATTTTATGATGAAATGCTTACAAAAAATTGAGAAAT  293

seq1  TCTGGATGAATGCCTTTGATAAGCAATACTTTCCATCTTACC-AAAAACA  347
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTGGATGAATGCCTTTGATAAGCAATACTTTCCATCTTACCAAAAAACA  343

seq1  ATATACACAAGTTTCATTTTGTGAATTGTAAGCCAGAAAAGGAATCTCAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACAAGTTTCATTTTGTGAATTGTAAGCCAGAAAAGGAATCTCAC  393

seq1  TGAAGATTTGTTAAGGCTATGTTTATGAGTTTGCCTGAAACAAAGGAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATTTGTTAAGGCTATGTTTATGAGTTTGCCTGAAACAAAGGAAAT  443

seq1  AAAGTTTGAAAACATCAAAGCAGCTCTTTTCGTTAACATATTTGT-AAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAGTTTGAAAACATCAAAGCAGCTCTTTTCGTTAACATATTTGTAAAGC  493

seq1  GTTTTGTCACACTGAATCATCTTGAAGTTTGAATTTTAAAGAGAAAATTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTCACACTGAATCATCTTGAAGTTTGAATTTTAAAGAGAAAATTT  543

seq1  AAAGAGTTCTATATTCTGAGAATTATGCCATAAGAGATAATAAGAAAGTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTCTATATTCTGAGAATTATGCCATAAGAGATAATAAGAAAGTC  593

seq1  ACAGATAATGGGCTTGAAAGTTAAGTATTTTATAGTAACCAAGAAAGCAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAATGGGCTTGAAAGTTAAGTATTTTATAGTAACCAAGAAAGCAG  643

seq1  ATTTTAAAATTAAAAATAAGGTATGTAACATACGTATTTTGCCAACATTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAATTAAAAATAAGGTATGTAACATACGTATTTTGCCAACATTA  693

seq1  ATGACCATGGAATGACTCACATCTCCATAGTAACCAACAATTACTCTTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCATGGAATGACTCACATCTCCATAGTAACCAACAATTACTCTTAT  743

seq1  CTATAAGCTTATTTGGAGCAAATAACAAAAACATATATTAGTTCATAGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGCTTATTTGGAGCAAATAACAAAAACATATATTAGTTCATAGGA  793

seq1  CTCTATATAAGGTAAATTTATACCCATGGAATTGGGCTGAGTATATCTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATATAAGGTAAATTTATACCCATGGAATTGGGCTGAGTATATCTCT  843

seq1  CAGTGGTAGTGCATTTACCATATTAGGTAAAATCCCTGGGTTGAATTCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTAGTGCATTTACCATATTAGGTAAAATCCCTGGGTTGAATTCTC  893

seq1  ACTATTACATAAGGAAAACATGATACATGTATTTAAAACTAGTAGCCAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTACATAAGGAAAACATGATACATGTATTTAAAACTAGTAGCCAGC  943

seq1  ATGAGTATGCATATGAGTCTTATCTTTCCATATCATAAAAACCTATGACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTATGCATATGAGTCTTATCTTTCCATATCATAAAAACCTATGACA  993

seq1  GACCTATTACAATTACTGAATTATACAAATT-CTATTTGAATTC  1039
      |||||||||||||||||||||||||||||||  |||||||||||
seq2  GACCTATTACAATTACTGAATTATACAAATTAATATTTGAATTC  1037