BAC Information

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BAC

Clone NameB6Ng01-025E01
Chromosome15 (Build37)
Map Location 92,670,989 - 92,750,791
singlet/doubletdoublet
Overlap genenone
Upstream geneMuc19, Smgc, LOC100042529, Cntn1, Pdzrn4
Downstream geneLOC100042552, LOC100043283, Glt8d3, Yaf2, Zcrb1, Pphln1, LOC627623, Prickle1, Zfp42-ps1, LOC100042627, LOC100042631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025E01.bB6Ng01-025E01.g
ACCDH856657DH856658
length1,1511,078
definitionDH856657|Mus musculus domesticus DNA, BAC clone: B6Ng01-025E01, 5' end.DH856658|Mus musculus domesticus DNA, BAC clone: B6Ng01-025E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,749,622 - 92,750,791)(92,670,989 - 92,672,071)
sequence
gaattctcatttccccccaccataacctccacaaattcacttttcctaca
atgcttaggtctgtaattcattcatcaaaccctgatgggtactagagtct
gtgattcttttaaggcaactgttatgaaaaaaaagccttatcattatctt
cttgaaggaaactatcttcattttctttttttttacatttccatcagtct
ctgcatcgtctacagtaaaaacaatatacagttttattttacttatttgt
cttcctgtctcccatggcaaacatctaatttgttactaaatggtatttat
gggtttgaacttgtttgttttctgcattaccccggcacccagggtcccag
gatacactgacaatacgtatatatgcttatcaatgtgccctcgggaaatg
aaataacacacaaagctcattcgctattttccaacaaacttcataacctt
ctccctgattctatcctttggatagatttctggtttatcttatgtgtgag
aaatgaccttataacccgtgtgtaacagttgtttgggttttattaagtgc
cctgctagctcgtgatataggggcattactcatagatatttgttggctac
cccagtaagccaagaaaatttatttttatatatttaactgcggtgtcttt
cttctcctgcatgtcatttaaaagtagctcacagtctaatgatagtgcca
ccaattccgactttagatgaacaggaaagagatagattgtcataatgggt
cagagaggtgaaaacttggtagcatacacatctcccagggaagaagcaaa
cttgatgaaaattaaacataaattcaaaccaaagggagccttctattctc
tttctatttagagaaagactcaatcattgcccttcttctgtcccccagag
ttatcaagaaacaggagctcagaatgtatgcatccagccatctgagatgt
tccccacagaaagcaagttattcctcattgcatttttttaaattgtgata
tcgtagtagtcattttgtagttcaccatttctctcatggtcaagacattc
actagggcctcagaataattttatcatgcgctattcttcccattgttgaa
aatttctgctgtgcgagaatcagttgtcatatttattgaggacgaacatg
g
gaattccatttagtcttttaaagcacagtcatgaaagccgggtctgggat
gtttaggagcactgatatttcctccagagctcgcacctgtacatcgtcaa
ggggtcctgatcctgagcagacacttgatggaggccacacaaagatcaca
gcacaaaggggattgtgtggactgtatggtgaccagtgtgtcctggacgt
aatgtctgcacatccagtttatatactgataatacaacccgcagtgggag
agaaggtgcccagtgtgtggggtctgccttttggagatgaaaggattgtt
agcatggagcccatgcagagacaattagtgcctcacgggagaacgaggaa
aagagcccttcatctctgttccaccgaccctttcacattgcatttctagc
tgctagaactgggaaagagatgtttaaagcactcagttctatggtgattt
gttacagtgactcaaacccactagtgaatgaatgccagacactgagtcaa
gtgtgcagcccatgtcagacagagttcaccagacttctcaaaatcttata
tataaagtgcattatgtctatatagaatcataagatgggattggcttaaa
taacgagaagccgaagacatctcacaatgaccaactacagctagagagcc
agacatactgggagcttcaggacaaaaagtacagtgactgaagagatgac
tcggtatttaagaacacttggggtttatgcagaggatctgaatttggttc
gcagcacccgaatcacatggctcacaactgatcttcttctgggctctaca
tgcgctatgcacatactcaggctcagacacgtacatataacataaaacaa
taaaagaaatctcttttataagagaaaaaaaagggacagaagccacagcc
tctatctataactcaccgaggctcacagaagccagatcctttttaaggac
caaggaatctggagtctggtgtccttagcaacaagaactgcagaggaaca
cccacagagtccacaggttgaatgtgcatgcttcttccattttctattct
ttcttacatccctgcctcgagctcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_92749622_92750791
seq2: B6Ng01-025E01.b_37_1187 (reverse)

seq1  CCATGTGTCGTCCATCAAATAAATAATGACTAACTTGATTCTCGGCACAG  50
      |||||| |||||| || ||||||| ||||| ||| |||||||| ||||||
seq2  CCATGT-TCGTCC-TC-AATAAAT-ATGAC-AAC-TGATTCTC-GCACAG  43

seq1  CAGAAAATTATCAACAAATGGGAAGAATAGCGCATGATTAAAAATTTATT  100
      ||| ||||| ||||| ||||||||||||||||||||||   ||| |||||
seq2  CAG-AAATTTTCAAC-AATGGGAAGAATAGCGCATGAT---AAAATTATT  88

seq1  CTTGAGGCCCTAGTGAATTGTCTTGACCATGGAGAGAAATTGGTTGGAAC  150
      | ||||||||||||||| |||||||||||| |||||||| ||||  ||||
seq2  C-TGAGGCCCTAGTGAA-TGTCTTGACCAT-GAGAGAAA-TGGT--GAAC  132

seq1  TACAAAAATGACTACTACGATATCACAATTTAAAAAAATGCAATGAGGAA  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAC-AAAATGACTACTACGATATCACAATTTAAAAAAATGCAATGAGGAA  181

seq1  TAACTTGCTTTTCTGTGGGGAACATCTCAGATGGCTGGATGCATACATTC  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGC-TTTCTGTGGGGAACATCTCAGATGGCTGGATGCATACATTC  230

seq1  TGAGCTCCTGTTTCTTGAT-ACTCTGGGGGACAGAAGAAGGGCAATGATT  299
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGAGCTCCTGTTTCTTGATAACTCTGGGGGACAGAAGAAGGGCAATGATT  280

seq1  GAGTCTTTCTCTAAATAGAAAGAGAATAGAAGGCTCCCTTTGGTTTGAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTTCTCTAAATAGAAAGAGAATAGAAGGCTCCCTTTGGTTTGAAT  330

seq1  TTATGTTTAATTTTCATCAAGTTTGCTTCTTCCCTGGGAGATGTGTATGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTAATTTTCATCAAGTTTGCTTCTTCCCTGGGAGATGTGTATGC  380

seq1  TACCAAGTTTTCACCTCTCTGACCCATTATGACAATCTATCTCTTTCCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGTTTTCACCTCTCTGACCCATTATGACAATCTATCTCTTTCCTG  430

seq1  TTCATCTAAAGTCGGAATTGGTGGCACTATCATTAGACTGTGAGCTACTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTAAAGTCGGAATTGGTGGCACTATCATTAGACTGTGAGCTACTT  480

seq1  TTAAATGACATGCAGGAGAAGAAAGACACCGCAGTTAAATATATAAAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGACATGCAGGAGAAGAAAGACACCGCAGTTAAATATATAAAAAT  530

seq1  AAATTTTCTTGGCTTACTGGGGTAGCCAACAAATATCTATGAGTAATGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCTTGGCTTACTGGGGTAGCCAACAAATATCTATGAGTAATGCC  580

seq1  CCTATATCACGAGCTAGCAGGGCACTTAATAAAACCCAAACAACTGTTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATCACGAGCTAGCAGGGCACTTAATAAAACCCAAACAACTGTTAC  630

seq1  ACACGGGTTATAAGGTCATTTCTCACACATAAGATAAACCAGAAATCTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGGTTATAAGGTCATTTCTCACACATAAGATAAACCAGAAATCTAT  680

seq1  CCAAAGGATAGAATCAGGGAGAAGGTTATGAAGTTTGTTGGAAAATAGCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGATAGAATCAGGGAGAAGGTTATGAAGTTTGTTGGAAAATAGCG  730

seq1  AATGAGCTTTGTGTGTTATTTCATTTCCCGAGGGCACATTGATAAGCATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCTTTGTGTGTTATTTCATTTCCCGAGGGCACATTGATAAGCATA  780

seq1  TATACGTATTGTCAGTGTATCCTGGGACCCTGGGTGCCGGGGTAATGCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACGTATTGTCAGTGTATCCTGGGACCCTGGGTGCCGGGGTAATGCAG  830

seq1  AAAACAAACAAGTTCAAACCCATAAATACCATTTAGTAACAAATTAGATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAGTTCAAACCCATAAATACCATTTAGTAACAAATTAGATG  880

seq1  TTTGCCATGGGAGACAGGAAGACAAATAAGTAAAATAAAACTGTATATTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATGGGAGACAGGAAGACAAATAAGTAAAATAAAACTGTATATTG  930

seq1  TTTTTACTGTAGACGATGCAGAGACTGATGGAAATGTAAAAAAAAAGAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTGTAGACGATGCAGAGACTGATGGAAATGTAAAAAAAAAGAAA  980

seq1  ATGAAGATAGTTTCCTTCAAGAAGATAATGATAAGGCTTTTTTTTCATAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGATAGTTTCCTTCAAGAAGATAATGATAAGGCTTTTTTTTCATAA  1030

seq1  CAGTTGCCTTAAAAGAATCACAGACTCTAGTACCCATCAGGGTTTGATGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCCTTAAAAGAATCACAGACTCTAGTACCCATCAGGGTTTGATGA  1080

seq1  ATGAATTACAGACCTAAGCATTGTAGGAAAAGTGAATTTGTGGAGGTTAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTACAGACCTAAGCATTGTAGGAAAAGTGAATTTGTGGAGGTTAT  1130

seq1  GGTGGGGGGAAATGAGAATTC  1170
      |||||||||||||||||||||
seq2  GGTGGGGGGAAATGAGAATTC  1151

seq1: chr15_92670989_92672071
seq2: B6Ng01-025E01.g_65_1142

seq1  GAATTCCATTTAGTCTTTTAAAGCACAGTCATGAAAGCCGGGTCTGGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTAGTCTTTTAAAGCACAGTCATGAAAGCCGGGTCTGGGAT  50

seq1  GTTTAGGAGCACTGATATTTCCTCCAGAGCTCGCACCTGTACATCGTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGAGCACTGATATTTCCTCCAGAGCTCGCACCTGTACATCGTCAA  100

seq1  GGGGTCCTGATCCTGAGCAGACACTTGATGGAGGCCACACAAAGATCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCCTGATCCTGAGCAGACACTTGATGGAGGCCACACAAAGATCACA  150

seq1  GCACAAAGGGGATTGTGTGGACTGTATGGTGACCAGTGTGTCCTGGACGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAGGGGATTGTGTGGACTGTATGGTGACCAGTGTGTCCTGGACGT  200

seq1  AATGTCTGCACATCCAGTTTATATACTGATAATACAACCCGCAGTGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTGCACATCCAGTTTATATACTGATAATACAACCCGCAGTGGGAG  250

seq1  AGAAGGTGCCCAGTGTGTGGGGTCTGCCTTTTGGAGATGAAAGGATTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTGCCCAGTGTGTGGGGTCTGCCTTTTGGAGATGAAAGGATTGTT  300

seq1  AGCATGGAGCCCATGCAGAGACAATTAGTGCCTCACGGGAGAACGAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGAGCCCATGCAGAGACAATTAGTGCCTCACGGGAGAACGAGGAA  350

seq1  AAGAGCCCTTCATCTCTGTTCCACCGACCCTTTCACATTGCATTTCTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCCTTCATCTCTGTTCCACCGACCCTTTCACATTGCATTTCTAGC  400

seq1  TGCTAGAACTGGGAAAGAGATGTTTAAAGCACTCAGTTCTATGGTGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGAACTGGGAAAGAGATGTTTAAAGCACTCAGTTCTATGGTGATTT  450

seq1  GTTACAGTGACTCAAACCCACTAGTGAATGAATGCCAGACACTGAGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGTGACTCAAACCCACTAGTGAATGAATGCCAGACACTGAGTCAA  500

seq1  GTGTGCAGCCCATGTCAGACAGAGTTCACCAGACTTCTCAAAATCTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAGCCCATGTCAGACAGAGTTCACCAGACTTCTCAAAATCTTATA  550

seq1  TATAAAGTGCATTATGTCTATATAGAATCATAAGATGGGATTGGCTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTGCATTATGTCTATATAGAATCATAAGATGGGATTGGCTTAAA  600

seq1  TAACGAGAAGCCGAAGACATCTCACAATGACCAACTACAGCTAGAGAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGAGAAGCCGAAGACATCTCACAATGACCAACTACAGCTAGAGAGCC  650

seq1  AGACATACTGGGAGCTTCAGGACAAAAAGTACAGTGACTGAAGAGATGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATACTGGGAGCTTCAGGACAAAAAGTACAGTGACTGAAGAGATGAC  700

seq1  TCGGTATTTAAGAACACTTGGGGTTTATGCAGAGGATCTGAATTTGGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTATTTAAGAACACTTGGGGTTTATGCAGAGGATCTGAATTTGGTTC  750

seq1  GCAGCACCCGAATCACATGGCTCACAACTGATCTTCTTCTGGGCTCTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACCCGAATCACATGGCTCACAACTGATCTTCTTCTGGGCTCTACA  800

seq1  TGCGCTATGCACATACTCAGGCTCAGACACGTACATATAACATAAAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTATGCACATACTCAGGCTCAGACACGTACATATAACATAAAACAA  850

seq1  TAAAAGAAATCTCTTTTAATAAGAGAAAAAAAAGGGACAGAAGCCACAGC  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAAAAGAAATCTCTTTT-ATAAGAGAAAAAAAAGGGACAGAAGCCACAGC  899

seq1  CTCTATCTATAACTCACCGAGGCTCACAGAAGCCAGATCCTTTTTAAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCTATAACTCACCGAGGCTCACAGAAGCCAGATCCTTTTTAAGGA  949

seq1  CCAAGGAATCTGGAGTCTGGTGTCCTTAGGCAACAAGAACTGCAGAGGAA  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCAAGGAATCTGGAGTCTGGTGTCCTTA-GCAACAAGAACTGCAGAGGAA  998

seq1  CACCCACAGAGTCCACAAGTTGAAATGTGCATGCTTCTTCCATTTTCTAT  1050
      ||||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  CACCCACAGAGTCCACAGGTTG-AATGTGCATGCTTCTTCCATTTTCTAT  1047

seq1  TCTTTCCTACATCCCTGCCTCCGAGGCTCATGT  1083
      |||||| ||||||||||||| ||| |||||| |
seq2  TCTTTCTTACATCCCTGCCT-CGA-GCTCATTT  1078