BAC Information

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BAC

Clone NameB6Ng01-025P01
Chromosome18 (Build37)15 (Build37)
Map Location 40,467,674 - 40,467,92574,916,674 - 74,917,252
singlet/doubletsingletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025P01.bB6Ng01-025P01.g
ACCDH857130DH857131
length283582
definitionDH857130|Mus musculus domesticus DNA, BAC clone: B6Ng01-025P01, 5' end.DH857131|Mus musculus domesticus DNA, BAC clone: B6Ng01-025P01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,467,674 - 40,467,925)(74,916,674 - 74,917,252)
sequence
gaattctctgaactcactgtcctttcaggtccacatttgctctggctctg
gcaactgactgaaccaaacaattaggctcatacctagaactttggaaatg
gtaatggagttgataacacaccctaacagaaagaggaaggctccactcac
tagtacactttcactagaagcctcgccctgtcagcagtttaggaatttgt
aaagccaatctggacaatatttaaatggtttggaatttctacttcatgtt
taaattttttttttttttttttttttttttttt
gaattcctgcacaacaagatggaggtggctggccttcatgtgacctattg
tttcaggtcgctttggtttctcccttcaccgggttctagtggcccggttt
gcaagtgcagaatggtgacgaggctccctaaagcagcctcgaccatccac
atacagcctcacatttttctcctactttttccttatgcttttaaacggca
gactctgaattggtcagtctaaattcttttggtgaaattaaattttaatt
aaaatgcataataaatgaaaaatataaccagtcttcttggaactcctttc
cagtaactcagactgaagactaagctagctgcaaagttacagtgatccac
ctccctctgccaccaccaccaccaccactgactggccatagctagaatca
taaaaagaaatggggaggggagaaaagaaaaggtgagaatcttagccggt
catagtgaggtacaatattcatgccagcatttgaaaagcagaggaaggct
cttacaggattgaggcctacaaagtgtcttcaagacagtcagggatgctt
acactaagaaactatgtatgaaaagaataaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_40467674_40467925
seq2: B6Ng01-025P01.b_39_291 (reverse)

seq1  TTAAACATGAAGTAGAAATTCCAAATCATGTAAATATTGTCCAGATTGGC  50
      ||||||||||||||||||||||||| ||| ||||||||||||||||||||
seq2  TTAAACATGAAGTAGAAATTCCAAACCATTTAAATATTGTCCAGATTGGC  50

seq1  TTTACAAATTCCTAAACTGCTGGCAGGGCGAGGCTTCTAGTGAAAGTCTT  100
      |||||||||||||||||||||| |||||||||||||||||||||||| | 
seq2  TTTACAAATTCCTAAACTGCTGACAGGGCGAGGCTTCTAGTGAAAGTGTA  100

seq1  CTAGTGAGTGGAGCCTTCCTCTTTCTGTTAGAGTGTGTTTTCAACTCCAT  150
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  CTAGTGAGTGGAGCCTTCCTCTTTCTGTTAGGGTGTGTTATCAACTCCAT  150

seq1  TACCATTTTCGAAGATCTAGGTATGAGCCT-ATTGTTTGGTTCAGTCAGT  199
      |||||||| | ||| ||||||||||||||| |||||||||||||||||||
seq2  TACCATTTCCAAAGTTCTAGGTATGAGCCTAATTGTTTGGTTCAGTCAGT  200

seq1  TGCCAGAGCCAGAGCAAAGGTGGACCTGAAAGGACAGTGAGTTCAGAGAA  249
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGCCAGAGCCAGAGCAAATGTGGACCTGAAAGGACAGTGAGTTCAGAGAA  250

seq1  TTC  252
      |||
seq2  TTC  253

seq1: chr15_74916674_74917252
seq2: B6Ng01-025P01.g_69_646 (reverse)

seq1  ATTTATTCTTTTCATACATAGTTTCTTAGTGTAAGCATCCCTGACTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTCTTTTCATACATAGTTTCTTAGTGTAAGCATCCCTGACTGTCT  50

seq1  TGAAGACACTTTGTAGGCCTCAATCCTGTAAGAGCCTTCCTCTGCTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACACTTTGTAGGCCTCAATCCTGTAAGAGCCTTCCTCTGCTTTTC  100

seq1  AAATGCTGGCATGAATGTTGTACCTCACTATGACCGGCTGAGATTCTCAC  150
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  AAATGCTGGCATGAATATTGTACCTCACTATGACCGGCTAAGATTCTCAC  150

seq1  CTTTTCTTTTCTCCCCCCCCCCCTTTCTTTTTATGATTCTAGCTTTGGCC  200
      |||||||||||| |||| |||| ||||||||||||||||||||| |||||
seq2  CTTTTCTTTTCT-CCCCTCCCCATTTCTTTTTATGATTCTAGCTATGGCC  199

seq1  AGGCAGTGGTGGTGGTTGTGGTGGCAGAGGGAGGTGGATCACTGTAACTT  250
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTCAGTGGTGGTGGTGGTGGTGGCAGAGGGAGGTGGATCACTGTAACTT  249

seq1  TGCAGCTAGCTTAGTCTTCAGTCTGAGTTACAGGAAAGGAGTTCCAAGAA  300
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGCAGCTAGCTTAGTCTTCAGTCTGAGTTACTGGAAAGGAGTTCCAAGAA  299

seq1  TACTGGTTATATTTTTCATTTATTATGCATTTTAATTAAAATTTAATTAC  350
       ||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GACTGGTTATATTTTTCATTTATTATGCATTTTAATTAAAATTTAATTTC  349

seq1  ACCAAAAGAATTTAGACTGACCAATTCAGAGTCTGCTATTTCAAAGCATA  400
      ||||||||||||||||||||||||||||||||||||  ||| ||||||||
seq2  ACCAAAAGAATTTAGACTGACCAATTCAGAGTCTGCCGTTTAAAAGCATA  399

seq1  AGGAAAAAGTAGGAGAAAAACGTGAGGCTGTTTGTGGATGGTCGAGGCTG  450
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  AGGAAAAAGTAGGAGAAAAATGTGAGGCTGTATGTGGATGGTCGAGGCTG  449

seq1  CTTTAGGGAGCCTCCTCACCATTCTGCACTTGCAAACCGGGCCACTAGAA  500
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTTTAGGGAGCCTCGTCACCATTCTGCACTTGCAAACCGGGCCACTAGAA  499

seq1  CCCGGTGAAGGGAGAAACCAAAGCGACCTGAAACAATAGGTCACATGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGTGAAGGGAGAAACCAAAGCGACCTGAAACAATAGGTCACATGAAG  549

seq1  GCCAGCCACCTCCATCTTGTTGTGCAGGA  579
      |||||||||||||||||||||||||||||
seq2  GCCAGCCACCTCCATCTTGTTGTGCAGGA  578