BAC Information

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BAC

Clone NameB6Ng01-027I02
Chromosome15 (Build37)
Map Location 102,595,435 - 102,727,610
singlet/doubletdoublet
Overlap geneLOC637762, LOC100043050
Upstream geneKrt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1
Downstream geneHoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027I02.bB6Ng01-027I02.g
ACCDH858230DH858231
length1,047111
definitionDH858230|Mus musculus domesticus DNA, BAC clone: B6Ng01-027I02, 5' end.DH858231|Mus musculus domesticus DNA, BAC clone: B6Ng01-027I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,726,557 - 102,727,610)(102,595,435 - 102,595,545)
sequence
gaattcactctgtaaaccaactgactttgaactcaaagacatctacctgc
ctctgcctcctaaatgctgggattaaagccaagcaccaccatgttcagct
ttgtttttgaaacaaggtctttctatacaacccttggctgatctggaact
cacagatatcttcctgcctcttcttcctagatgctaggattacaacctgt
atgccaccatgcctggttatgtccaaggagatttcatctaaactggaagg
tgagcaagggttctagaagacgctcagttcaccttaagacacatttacca
actaactttgtgcatgtgtgcatgcaaactccactcccagtgtgcatgct
catacccacagttccattaggaactgaattatgtatgaattttgttatta
tgtatacattcttgtacaactaaaggcacaactatatgttagtcatacaa
gaggcacactataaattagtgttgttctaagtgccctacatgcaccacct
tatttaaatagtcttagaaaccctacagggaagtattattatcatccttt
ctaggaccgaaggaatggagctaaagagaaatcaagtggttttctcagga
ctagggtgatggtagagatagcatgtaagaagaaaatcatgttggaagta
caccaaactgcctcagacatgttaagcaggaagaagggttatttctggtt
tgtttgattttgtttctgtttctatcttagtgctgggattgaatccagat
ttccagacaggctcagtaaatgatccagccctgagctacactcccaaccc
aagtttttcacgctgtaaatcacaagattatcatttttataggataacat
ggtcagatattgtaagccattgcatgtgttcacacacacacactcaaacc
ccagaaaataaaacaaatgcaaccaaatgtaaacatcaaaactccgatgg
tctgcagtccttttaaacttataaggtcttctgtgtgctgatcctggatg
cctgtatttagaacgaagagtggagaacaaccacatatgccttcccg
aggtgttcagaaatggggcttctggaaggtgacaggaaaaggttgtcatg
gtagactgtcatgcttgagtactgatagctttctgagagagagtgggagg
ggagggaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102726557_102727610
seq2: B6Ng01-027I02.b_42_1088 (reverse)

seq1  CGGGAAGGCATTTAGGTGTTTATCTCCACTCTTCTGTCTGAAATAACAGC  50
      ||||||||||| | |  |||  ||||||||||||  ||| |||||   ||
seq2  CGGGAAGGCATAT-GTGGTTGTTCTCCACTCTTCGTTCT-AAATACAGGC  48

seq1  ATCCAGGATCAGCACACAGAAGACCTTGATAAGTTTAAAAGGAACTGCAG  100
      ||||||||||||||||||||||||||| |||||||||||||| |||||||
seq2  ATCCAGGATCAGCACACAGAAGACCTT-ATAAGTTTAAAAGG-ACTGCAG  96

seq1  -CCATCGGAGTTTTTGATGTTATCATTTTGGTTGCATTTGTTTTTATTTT  149
       ||||||||| ||||||||||  || |||||||||||||| |||||||||
seq2  ACCATCGGAG-TTTTGATGTTTACA-TTTGGTTGCATTTG-TTTTATTTT  143

seq1  CTGGGGTTTTGTGTGTGTGTGTGTGAACCACATGCAATGGCTGAC-ATAT  198
      |||||| |||| ||||||||||||||| |||||||||||||| || ||||
seq2  CTGGGG-TTTGAGTGTGTGTGTGTGAA-CACATGCAATGGCTTACAATAT  191

seq1  CTGACCATGTTATCCTATAAAAATGATAATCTTGTGATTTACAGCGTGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCATGTTATCCTATAAAAATGATAATCTTGTGATTTACAGCGTGAA  241

seq1  AAACTTGGGTTGGGAGTGTAGCTCAGGGCTGGATCATTTACTGAGCCTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGGGTTGGGAGTGTAGCTCAGGGCTGGATCATTTACTGAGCCTGT  291

seq1  CTGGAAATCTGGATTCAATCCCAGCACTAAGATAGAAACAGAAACAAAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATCTGGATTCAATCCCAGCACTAAGATAGAAACAGAAACAAAAT  341

seq1  CAAACAAACCAGAAATAACCCTTCTTCCTGCTTAACATGTCTGAGGCAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACCAGAAATAACCCTTCTTCCTGCTTAACATGTCTGAGGCAGT  391

seq1  TTGGTGTACTTCCAACATGATTTTCTTCTTACATGCTATCTCTACCATCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTACTTCCAACATGATTTTCTTCTTACATGCTATCTCTACCATCA  441

seq1  CCCTAGTCCTGAGAAAACCACTTGATTTCTCTTTAGCTCCATTCCTTCGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGTCCTGAGAAAACCACTTGATTTCTCTTTAGCTCCATTCCTTCGG  491

seq1  TCCTAGAAAGGATGATAATAATACTTCCCTGTAGGGTTTCTAAGACTATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAAAGGATGATAATAATACTTCCCTGTAGGGTTTCTAAGACTATT  541

seq1  TAAATAAGGTGGTGCATGTAGGGCACTTAGAACAACACTAATTTATAGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGGTGGTGCATGTAGGGCACTTAGAACAACACTAATTTATAGTG  591

seq1  TGCCTCTTGTATGACTAACATATAGTTGTGCCTTTAGTTGTACAAGAATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTTGTATGACTAACATATAGTTGTGCCTTTAGTTGTACAAGAATG  641

seq1  TATACATAATAACAAAATTCATACATAATTCAGTTCCTAATGGAACTGTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATAATAACAAAATTCATACATAATTCAGTTCCTAATGGAACTGTG  691

seq1  GGTATGAGCATGCACACTGGGAGTGGAGTTTGCATGCACACATGCACAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGAGCATGCACACTGGGAGTGGAGTTTGCATGCACACATGCACAAA  741

seq1  GTTAGTTGGTAAATGTGTCTTAAGGTGAACTGAGCGTCTTCTAGAACCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTGGTAAATGTGTCTTAAGGTGAACTGAGCGTCTTCTAGAACCCT  791

seq1  TGCTCACCTTCCAGTTTAGATGAAATCTCCTTGGACATAACCAGGCATGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACCTTCCAGTTTAGATGAAATCTCCTTGGACATAACCAGGCATGG  841

seq1  TGGCATACAGGTTGTAATCCTAGCATCTAGGAAGAAGAGGCAGGAAGATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATACAGGTTGTAATCCTAGCATCTAGGAAGAAGAGGCAGGAAGATA  891

seq1  TCTGTGAGTTCCAGATCAGCCAAGGGTTGTATAGAAAGACCTTGTTTCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAGTTCCAGATCAGCCAAGGGTTGTATAGAAAGACCTTGTTTCAA  941

seq1  AAACAAAGCTGAACATGGTGGTGCTTGGCTTTAATCCCAGCATTTAGGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGCTGAACATGGTGGTGCTTGGCTTTAATCCCAGCATTTAGGAG  991

seq1  GCAGAGGCAGGTAGATGTCTTTGAGTTCAAAGTCAGTTGGTTTACAGAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGGTAGATGTCTTTGAGTTCAAAGTCAGTTGGTTTACAGAGT  1041

seq1  GAATTC  1054
      ||||||
seq2  GAATTC  1047

seq1: chr15_102595435_102595545
seq2: B6Ng01-027I02.g_74_184

seq1  AGGTGTTCAGAAATGGGGCTTCTGGAAGGTGACAGGAAAAGGTTGTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTCAGAAATGGGGCTTCTGGAAGGTGACAGGAAAAGGTTGTCATG  50

seq1  GTAGACTGTCATGCTTGAGTACTGATAGCTTTCTGAGAGAGAGTGGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTGTCATGCTTGAGTACTGATAGCTTTCTGAGAGAGAGTGGGAGG  100

seq1  GGAGGGAAGGA  111
      |||||||||||
seq2  GGAGGGAAGGA  111