BAC Information

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BAC

Clone NameB6Ng01-030K03
Chromosome15 (Build37)
Map Location 47,362,390 - 47,475,852
singlet/doubletdoublet
Overlap geneCsmd3
Upstream geneLOC100039438, LOC665130, LOC100039485, LOC100039493
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030K03.bB6Ng01-030K03.g
ACCDH860477DH860478
length1,1021,111
definitionDH860477|Mus musculus domesticus DNA, BAC clone: B6Ng01-030K03, 5' end.DH860478|Mus musculus domesticus DNA, BAC clone: B6Ng01-030K03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,362,390 - 47,363,505)(47,474,720 - 47,475,852)
sequence
gaattctggctgcctggttcaactcagctgttctgactcaaactcctctc
caaactgactgattcaatctggcttctctttgcttctgactaaactactc
tgtttggcctcaaactaactctagcaatgtattcagcagcagcaagaaag
aaaaccatggcttagaaaggaatgcatatggtcaaagtggatgacataaa
tgtataaatgccataatgaaacctgttataatgaataattttatatgtaa
aaatgttttaaaagaagctaagtgcatcctctctcaaatttaatatataa
gtgactttacagtaagttttacatttttcttttatactattgagaatagt
gatgaataacaaatatagacttattttctttatagctactaattattata
tttaaaattatttattacattatctgatattatgaggactaagccaagca
gactccatgataggctccagactggcagtttgagagtctaggcctaagtt
tgtatttccaagagctagacaggtctgggccaggcagttactggaaaaac
tgtagccctgtgggcagccaatcaggagctccttttgtcatctagcctaa
ggcaaagccaaacagttcagataagtcagcaatagtttctaggctcctcc
tggaaagtttcaggagccctagccaatcccagagacacctcatacccctg
gaaatagagacaaccaatcacgataaagctcacctactcctccctgaaat
ttcactcattggctttaagtggatcctatgtagctcacacctctgtcttc
atcctgttccatcatggtgaattgtatactccttcatcatggatttctac
agaatgaacactcttggctttttcatactatttgagtctagctgtcattc
ttctcaaatcaaagacccttacatatatttcaaatgttaaatgtcaaagc
tggaacagtctgccattggaggtactggcagatgattttctagatatatc
ttaaaataggagagaaatcagagcttgcacatgggtgcatttataaggaa
tgtggtctcaaatacagaatttttttgtccaattggggaaggacgattga
gg
gaattccagccaattccaaaagagaaagcaaaatagaacatggaaatttt
acctatggcactgtggtattctatgactgcaacccaggctattttttatt
tggctcttcagttttgatatgtcagccaaatggacaatgggacaaacctt
taccagaatgtatcagtaagtagataatatgaattgttcctacaaaaata
tgtcatggaaacaacattcatgtttattgccatatctcaaactatacaca
ggaagaaattaccttgacttaattgatcagtttcaagatcacatattcac
atatttcattaattcattgacttaattgtttttcagtaatatcactttac
tttttaaaatgtaaacattcttctattatagctataatactatggctatt
cctagagatgatggaaaggacatctacttctcccagataaagaatccaca
aatcatggcaagaacccatggggttatgtacaagaagttgaatgaaaggt
taaagcaagaatgactaatagacaggtggttcactctaagtccaccatgc
gtgtcagttcaagaaagctaaaaacccagagtgtactgcacaacttactt
aagcttagacaattataggctgtcacttttaggcagcttagatggtagga
acctcttatagttctctgcatctttcagttgcttggctgatgtgaacctc
tttatctctttgacagtgtctcttggcagtctttaactgctcctatttac
tcgggaagagggaggtgtatagaatctggtcattttcagtttttgattcc
tcagcaaaaggaacttccatgataaataaatgtgactcaataagttcact
ccaagatgcaggttttaatttaacacaagaaatactaatatgccatatat
cattctttggctatggatgaagcagcagatatgagacacagtacacagta
ttttttaacaatattattgtttagagacaaaaatatttatattttgtatc
actttaactattgttgatatactattgttgaagtggagcaactattgttt
ctcagatatgtgatttaagaacctcattctttttttaagttacatttttc
ttttttcaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_47362390_47363505
seq2: B6Ng01-030K03.b_45_1146

seq1  GAATTCTGGCTGCCTGGTTCAACTCAGCTGTTCTGACTCAAACTCCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCTGCCTGGTTCAACTCAGCTGTTCTGACTCAAACTCCTCTC  50

seq1  CAAACTGACTGATTCAATCTGGCTTCTCTTTGCTTCTGACTAAACTACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGACTGATTCAATCTGGCTTCTCTTTGCTTCTGACTAAACTACTC  100

seq1  TGTTTGGCCTCAAACTAACTCTAGCAATGTATTCAGCAGCAGCAAGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGCCTCAAACTAACTCTAGCAATGTATTCAGCAGCAGCAAGAAAG  150

seq1  AAAACCATGGCTTAGAAAGGAATGCATATGGTCAAAGTGGATGACATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATGGCTTAGAAAGGAATGCATATGGTCAAAGTGGATGACATAAA  200

seq1  TGTATAAATGCCATAATGAAACCTGTTATAATGAATAATTTTATATGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAATGCCATAATGAAACCTGTTATAATGAATAATTTTATATGTAA  250

seq1  AAATGTTTTAAAAGAAGCTAAGTGCATCCTCTCTCAAATTTAATATATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTAAAAGAAGCTAAGTGCATCCTCTCTCAAATTTAATATATAA  300

seq1  GTGACTTTACAGTAAGTTTTACATTTTTCTTTTATACTATTGAGAATAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTTACAGTAAGTTTTACATTTTTCTTTTATACTATTGAGAATAGT  350

seq1  GATGAATAACAAATATAGACTTATTTTCTTTATAGCTACTAATTATTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATAACAAATATAGACTTATTTTCTTTATAGCTACTAATTATTATA  400

seq1  TTTAAAATTATTTATTACATTATCTGATATTATGAGGACTAAGCCAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTATTTATTACATTATCTGATATTATGAGGACTAAGCCAAGCA  450

seq1  GACTCCATGATAGGCTCCAGACTGGCAGTTTGAGAGTCTAGGCCTAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCATGATAGGCTCCAGACTGGCAGTTTGAGAGTCTAGGCCTAAGTT  500

seq1  TGTATTTCCAAGAGCTAGACAGGTCTGGGCCAGGCAGTTACTGGAAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCCAAGAGCTAGACAGGTCTGGGCCAGGCAGTTACTGGAAAAAC  550

seq1  TGTAGCCCTGTGGGCAGCCAATCAGGAGCTCCTTTTGTCATCTAGCCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCTGTGGGCAGCCAATCAGGAGCTCCTTTTGTCATCTAGCCTAA  600

seq1  GGCAAAGCCAAACAGTTCAGATAAGTCAGCAATAGTTTCTAGGCTCCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGCCAAACAGTTCAGATAAGTCAGCAATAGTTTCTAGGCTCCTCC  650

seq1  TGGAAAGTTTCAGGAGCCCTAGCCAATCCCAGAGACACCTCATACCCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTTTCAGGAGCCCTAGCCAATCCCAGAGACACCTCATACCCCTG  700

seq1  GAAATAGAGACAACCAATCAGGATAAAGCTCACCTACTCCTCCCTGAAAT  750
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAAATAGAGACAACCAATCACGATAAAGCTCACCTACTCCTCCCTGAAAT  750

seq1  TTCACTCATTGGCTTTAAGTGGATCCTATGTAGCTCACACCTCTGTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCATTGGCTTTAAGTGGATCCTATGTAGCTCACACCTCTGTCTTC  800

seq1  ATCCTGTTCCATCATGGTGAATTGTATACTCCTTCATCATGGATTTCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTTCCATCATGGTGAATTGTATACTCCTTCATCATGGATTTCTAC  850

seq1  AGAATGAACACTCTTGGCTTTTTCATACTATTTGAGTCTAGGCTGTCATT  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGAATGAACACTCTTGGCTTTTTCATACTATTTGAGTCTA-GCTGTCATT  899

seq1  CTTCTCAAATCAAAGACCCTTACAATATATTTCAAAATGTTAAATGTCAA  950
      ||||||||||||||||||||||| ||||||||| |||||||||||||| |
seq2  CTTCTCAAATCAAAGACCCTTAC-ATATATTTC-AAATGTTAAATGTC-A  946

seq1  AAGCTGGAACAGTCTGCCATTGGAGGTACTGGCAGATGATTTTCTTAAGA  1000
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  AAGCTGGAACAGTCTGCCATTGGAGGTACTGGCAGATGATTTTCT--AGA  994

seq1  TATATCTTAAAATAGGAGAGAAATCAAGAGCTTGACACATTGGGTGCATT  1050
      ||||||||||||||||||||||||| |||||||| |||| ||||||||||
seq2  TATATCTTAAAATAGGAGAGAAATC-AGAGCTTG-CACA-TGGGTGCATT  1041

seq1  TATAAAGAAATGT-GTCTCAAAATTACAAGAATTATTTTGTCCATGTGGG  1099
      ||| ||| ||||| ||||||||  ||| |||||| |||||||||  ||||
seq2  TAT-AAGGAATGTGGTCTCAAA--TAC-AGAATTTTTTTGTCCAATTGGG  1087

seq1  GAAAGGACAGATTGAGG  1116
      | |||||| ||||||||
seq2  G-AAGGAC-GATTGAGG  1102

seq1: chr15_47474720_47475852
seq2: B6Ng01-030K03.g_64_1174 (reverse)

seq1  AATTGAAAAAAGAAAAAATGTAACATTTAAAAAAAAGAAATGGAGCTCTT  50
      |||||||||||| |||||||||||   | ||||||||||   ||| |  |
seq2  AATTGAAAAAAG-AAAAATGTAAC---TTAAAAAAAGAA--TGAGGTTCT  44

seq1  TAAATCACATAATCTGAAGAAACAATAGTTGCT-CACATCAACAATAAGG  99
      |||||||||| ||||| |||||||||||||||| ||| |||||||||  |
seq2  TAAATCACAT-ATCTG-AGAAACAATAGTTGCTCCACTTCAACAATA--G  90

seq1  TATATCAAACAATAGTTTAAAGTTGATACAAAATATAAATATTTTTGTCT  149
      |||||| |||||||| |||||| |||||||||||||||||||||||||||
seq2  TATATC-AACAATAG-TTAAAG-TGATACAAAATATAAATATTTTTGTCT  137

seq1  CTAAAACAATAATATTGTTTAAAAAATTACTGTTGTACTTGTGTCTCATT  199
      || ||||||||||||||||  ||||| ||||| ||||| ||||||||| |
seq2  CT-AAACAATAATATTGTT--AAAAAATACTG-TGTAC-TGTGTCTCA-T  181

seq1  ATCTGCTGCCTTCATCCATAGCCAAAGAATGATATTATGGCATATTAGTA  249
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  ATCTGCTG-CTTCATCCATAGCCAAAGAATGATA-TATGGCATATTAGTA  229

seq1  TTTCTTGTGTTAAATTAAAACCTGCATCTTGGAGTGAAACTTATTGAGTC  299
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTCTTGTGTTAAATTAAAACCTGCATCTTGGAGTG-AACTTATTGAGTC  278

seq1  ACATTTTATTTATCATGGAAGTTCCTTTTGCTGAGGAATCAAAAACTGAA  349
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACA-TTTATTTATCATGGAAGTTCCTTTTGCTGAGGAATCAAAAACTGAA  327

seq1  AATGACCAGATTCTATACACCTCCCTCTTCCCGAGTAAATAGGAGCAGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACCAGATTCTATACACCTCCCTCTTCCCGAGTAAATAGGAGCAGTT  377

seq1  AAAGACTGCCAAGAGACACTGTCAAAGAGATAAAGAGGTTCACATCAGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGCCAAGAGACACTGTCAAAGAGATAAAGAGGTTCACATCAGCC  427

seq1  AAGCAACTGAAAGATGCAGAGAACTATAAGAGGTTCCTACCATCTAAGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTGAAAGATGCAGAGAACTATAAGAGGTTCCTACCATCTAAGCT  477

seq1  GCCTAAAAGTGACAGCCTATAATTGTCTAAGCTTAAGTAAGTTGTGCAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAAGTGACAGCCTATAATTGTCTAAGCTTAAGTAAGTTGTGCAGT  527

seq1  ACACTCTGGGTTTTTAGCTTTCTTGAACTGACACGCATGGTGGACTTAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTGGGTTTTTAGCTTTCTTGAACTGACACGCATGGTGGACTTAGA  577

seq1  GTGAACCACCTGTCTATTAGTCATTCTTGCTTTAACCTTTCATTCAACTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCACCTGTCTATTAGTCATTCTTGCTTTAACCTTTCATTCAACTT  627

seq1  CTTGTACATAACCCCATGGGTTCTTGCCATGATTTGTGGATTCTTTATCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTACATAACCCCATGGGTTCTTGCCATGATTTGTGGATTCTTTATCT  677

seq1  GGGAGAAGTAGATGTCCTTTCCATCATCTCTAGGAATAGCCATAGTATTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGTAGATGTCCTTTCCATCATCTCTAGGAATAGCCATAGTATTA  727

seq1  TAGCTATAATAGAAGAATGTTTACATTTTAAAAAGTAAAGTGATATTACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATAATAGAAGAATGTTTACATTTTAAAAAGTAAAGTGATATTACT  777

seq1  GAAAAACAATTAAGTCAATGAATTAATGAAATATGTGAATATGTGATCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACAATTAAGTCAATGAATTAATGAAATATGTGAATATGTGATCTT  827

seq1  GAAACTGATCAATTAAGTCAAGGTAATTTCTTCCTGTGTATAGTTTGAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGATCAATTAAGTCAAGGTAATTTCTTCCTGTGTATAGTTTGAGA  877

seq1  TATGGCAATAAACATGAATGTTGTTTCCATGACATATTTTTGTAGGAACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCAATAAACATGAATGTTGTTTCCATGACATATTTTTGTAGGAACA  927

seq1  ATTCATATTATCTACTTACTGATACATTCTGGTAAAGGTTTGTCCCATTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATATTATCTACTTACTGATACATTCTGGTAAAGGTTTGTCCCATTG  977

seq1  TCCATTTGGCTGACATATCAAAACTGAAGAGCCAAATAAAAAATAGCCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTGGCTGACATATCAAAACTGAAGAGCCAAATAAAAAATAGCCTG  1027

seq1  GGTTGCAGTCATAGAATACCACAGTGCCATAGGTAAAATTTCCATGTTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCAGTCATAGAATACCACAGTGCCATAGGTAAAATTTCCATGTTCT  1077

seq1  ATTTTGCTTTCTCTTTTGGAATTGGCTGGAATTC  1133
      ||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTTTCTCTTTTGGAATTGGCTGGAATTC  1111