BAC Information

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BAC

Clone NameB6Ng01-032J17
Chromosome15 (Build37)
Map Location 101,827,950 - 102,010,122
singlet/doubletdoublet
Overlap geneKrt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad
Upstream geneScn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78
Downstream geneZfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032J17.bB6Ng01-032J17.g
ACCDH861889DH861890
length953987
definitionDH861889|Mus musculus domesticus DNA, BAC clone: B6Ng01-032J17, 5' end.DH861890|Mus musculus domesticus DNA, BAC clone: B6Ng01-032J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,009,190 - 102,010,122)(101,827,950 - 101,828,937)
sequence
gaattcttcctggctgtaggggaagggtacccttgaccttgatcttgatt
ggaggagccactgacccagctttgccttgtcttacccagggctgactctg
tggcctggaaccctcacaagcttctcgccgcagggctgcagtgctccgct
cttcttctccgggacacctcggtgggtctgccctggttccagaccccagc
cttcctttctctagaccctagtttatctgtctcaccagagagttctgggc
cttaacgtgctcccttagctctcccagccgaagccacacctctctgacca
ccctaaccccgtgttgagctccatgtgcccagggaattgtttccatggga
cagaaaggatttctgtcttgttcttatggtcggagggatctggggcggaa
tttgggaagagctcttgtgttggcaggcagctgcctcagtgctgctaact
ccagggaggagagaggagactgagctgagaccctgctgcgtagcgcctca
ggacgacctgctgatagcttcctccccacagaacctgctcaagcgctgcc
atggatcccaggccagctacctcttccagcaagacaagttctacgatgtg
gctctggacaccggagacaaagtggtgcagtgtggccgccgcgtggactg
tctgaagctatggctcatgtggaaggcacagggtgggcaggggttggagc
ggcgcatcgaccaggcctttgctctcacccggtaagcatgaaggacccag
atcgccttctcttccactctccatggccttcctggggcctctgtaggcct
cccccgcctccctgttgcctcctttcccccatgtgtgctttcttaccctt
tccccccaggtacttggtggaggagattaaaaagcgggaaggatttgagt
tgttaatggaggtaggacttctggtctctttgattgcttctccaagcccc
acc
gaattctgctgagaacaagagtccaaccccttccctttgtttctatcaac
tgcttttgagaacagcgtctttcaaagccctgacctccaccctgacctcc
tgggccccctaccctccatccccaaggcccaggactctcacctgagtagc
cgctggtggtcttcgtatgaatgctcatgttctgcatcccagactccagc
ctgtaaccagatgcgtggggcatcagggccaacccgtgactcttttcatc
ccggagcagaatccaagtcccaggagagctccgggcagcacccacccctc
cccattcccagtttcctgagacctccaaacccacctgctctcctccccct
ccagcagcttgcggtaggtggtgatctcgatgtccagggccagcttgacg
ttcataagctcctggtactcgcgcagctgcctggccatgtcctgcttggc
ccgttgcagggcagcctccagctcagccagcttggtctgggcatccttaa
tggccatctccccacgctgctcagcatcagcgatggctgcctccaacgat
gccctctgtggggaaggagacatatgagcacccaggtggcatctggtgta
tgtccctccctaaggcccatccgcactgggcttctcttttgttgtcattt
gttttgaagcccaggctagcctagaactcactatataacccaggctggcc
ttgaatttacagcaaccctcctttggtaacctaccaactgctgtagttac
cagtgcatattaccatgcctcgttttatgcctcactgatcccaggacttt
gggcatgttaggcgagtccttgagcaactgagctgttccccctcttccca
gttcctggcagagcccaccagtaacctggcctttgagggctcaatctccg
cctgcaagcggttgatgttgcggtcatctcggagatcttctgtctttgtg
cgcgcagatcatcccgtgcttccagcagggtctgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102009190_102010122
seq2: B6Ng01-032J17.b_47_979 (reverse)

seq1  TCAAAGGAGCCAGGAGTCCTACCTCCATTACCAACTCAAATCCTTCCCGC  50
      ||||||   |||| |||||||||||||||| |||||||||||||||||||
seq2  TCAAAGAGACCAGAAGTCCTACCTCCATTAACAACTCAAATCCTTCCCGC  50

seq1  TTTTTAATCTCCTCCACCAAGTACCTGGGGGGAAAGGGTAAGAAAGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATCTCCTCCACCAAGTACCTGGGGGGAAAGGGTAAGAAAGCACA  100

seq1  CATGGGGGAAAGGAGGCAACAGGGAGGCGGGGGAGGCCTACAGAGGCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGGGAAAGGAGGCAACAGGGAGGCGGGGGAGGCCTACAGAGGCCCC  150

seq1  AGGAAGGCCATGGAGAGTGGAAGAGAAGGCGATCTGGGTCCTTCATGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGCCATGGAGAGTGGAAGAGAAGGCGATCTGGGTCCTTCATGCTT  200

seq1  ACCGGGTGAGAGCAAAGGCCTGGTCGATGCGCCGCTCCAACCCCTGCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGTGAGAGCAAAGGCCTGGTCGATGCGCCGCTCCAACCCCTGCCCA  250

seq1  CCCTGTGCCTTCCACATGAGCCATAGCTTCAGACAGTCCACGCGGCGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGCCTTCCACATGAGCCATAGCTTCAGACAGTCCACGCGGCGGCC  300

seq1  ACACTGCACCACTTTGTCTCCGGTGTCCAGAGCCACATCGTAGAACTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCACCACTTTGTCTCCGGTGTCCAGAGCCACATCGTAGAACTTGT  350

seq1  CTTGCTGGAAGAGGTAGCTGGCCTGGGATCCATGGCAGCGCTTGAGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGGAAGAGGTAGCTGGCCTGGGATCCATGGCAGCGCTTGAGCAGG  400

seq1  TTCTGTGGGGAGGAAGCTATCAGCAGGTCGTCCTGAGGCGCTACGCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGGGGAGGAAGCTATCAGCAGGTCGTCCTGAGGCGCTACGCAGCA  450

seq1  GGGTCTCAGCTCAGTCTCCTCTCTCCTCCCTGGAGTTAGCAGCACTGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCAGCTCAGTCTCCTCTCTCCTCCCTGGAGTTAGCAGCACTGAGG  500

seq1  CAGCTGCCTGCCAACACAAGAGCTCTTCCCAAATTCCGCCCCAGATCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCCTGCCAACACAAGAGCTCTTCCCAAATTCCGCCCCAGATCCCT  550

seq1  CCGACCATAAGAACAAGACAGAAATCCTTTCTGTCCCATGGAAACAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACCATAAGAACAAGACAGAAATCCTTTCTGTCCCATGGAAACAATTC  600

seq1  CCTGGGCACATGGAGCTCAACACGGGGTTAGGGTGGTCAGAGAGGTGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCACATGGAGCTCAACACGGGGTTAGGGTGGTCAGAGAGGTGTGG  650

seq1  CTTCGGCTGGGAGAGCTAAGGGAGCACGTTAAGGCCCAGAACTCTCTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGCTGGGAGAGCTAAGGGAGCACGTTAAGGCCCAGAACTCTCTGGT  700

seq1  GAGACAGATAAACTAGGGTCTAGAGAAAGGAAGGCTGGGGTCTGGAACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGATAAACTAGGGTCTAGAGAAAGGAAGGCTGGGGTCTGGAACCA  750

seq1  GGGCAGACCCACCGAGGTGTCCCGGAGAAGAAGAGCGGAGCACTGCAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGACCCACCGAGGTGTCCCGGAGAAGAAGAGCGGAGCACTGCAGCC  800

seq1  CTGCGGCGAGAAGCTTGTGAGGGTTCCAGGCCACAGAGTCAGCCCTGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGCGAGAAGCTTGTGAGGGTTCCAGGCCACAGAGTCAGCCCTGGGT  850

seq1  AAGACAAGGCAAAGCTGGGTCAGTGGCTCCTCCAATCAAGATCAAGGTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAGGCAAAGCTGGGTCAGTGGCTCCTCCAATCAAGATCAAGGTCA  900

seq1  AGGGTACCCTTCCCCTACAGCCAGGAAGAATTC  933
      |||||||||||||||||||||||||||||||||
seq2  AGGGTACCCTTCCCCTACAGCCAGGAAGAATTC  933

seq1: chr15_101827950_101828937
seq2: B6Ng01-032J17.g_69_1054

seq1  GAATTCTGCTGAGAACAAGAGTCCAACCCCTTCCCTTTGTTTCTATCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTGAGAACAAGAGTCCAACCCCTTCCCTTTGTTTCTATCAAC  50

seq1  TGCTTTTGAGAACAGCGTCTTTCAAAGCCCTGACCTCCACCCTGACCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTGAGAACAGCGTCTTTCAAAGCCCTGACCTCCACCCTGACCTCC  100

seq1  TGGGCCCCCTACCCTCCATCCCCAAGGCCCAGGACTCTCACCTGAGTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCCCTACCCTCCATCCCCAAGGCCCAGGACTCTCACCTGAGTAGC  150

seq1  CGCTGGTGGTCTTCGTATGAATGCTCATGTTCTGCATCCCAGACTCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGGTGGTCTTCGTATGAATGCTCATGTTCTGCATCCCAGACTCCAGC  200

seq1  CTGTAACCAGATGCGTGGGGCATCAGGGCCAACCCGTGACTCTTTTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACCAGATGCGTGGGGCATCAGGGCCAACCCGTGACTCTTTTCATC  250

seq1  CCGGAGCAGAATCCAAGTCCCAGGAGAGCTCCGGGCAGCACCCACCCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGCAGAATCCAAGTCCCAGGAGAGCTCCGGGCAGCACCCACCCCTC  300

seq1  CCCATTCCCAGTTTCCTGAGACCTCCAAACCCACCTGCTCTCCTCCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCCCAGTTTCCTGAGACCTCCAAACCCACCTGCTCTCCTCCCCCT  350

seq1  CCAGCAGCTTGCGGTAGGTGGTGATCTCGATGTCCAGGGCCAGCTTGACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGCTTGCGGTAGGTGGTGATCTCGATGTCCAGGGCCAGCTTGACG  400

seq1  TTCATAAGCTCCTGGTACTCGCGCAGCTGCCTGGCCATGTCCTGCTTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAGCTCCTGGTACTCGCGCAGCTGCCTGGCCATGTCCTGCTTGGC  450

seq1  CCGTTGCAGGGCAGCCTCCAGCTCAGCCAGCTTGGTCTGGGCATCCTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGCAGGGCAGCCTCCAGCTCAGCCAGCTTGGTCTGGGCATCCTTAA  500

seq1  TGGCCATCTCCCCACGCTGCTCAGCATCAGCGATGGCTGCCTCCAACGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATCTCCCCACGCTGCTCAGCATCAGCGATGGCTGCCTCCAACGAT  550

seq1  GCCCTCTGTGGGGAAGGAGACATATGAGCACCCAGGTGGCATCTGGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTGTGGGGAAGGAGACATATGAGCACCCAGGTGGCATCTGGTGTA  600

seq1  TGTCCCTCCCTAAGGCCCATCCGCACTGGGCTTCTC-TTTGTTGTCATTT  649
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTCCCTCCCTAAGGCCCATCCGCACTGGGCTTCTCTTTTGTTGTCATTT  650

seq1  GTTTTGAAGCCCAGGCTAGCCTAGAACTCACTATATAACCCAGGCTGGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAAGCCCAGGCTAGCCTAGAACTCACTATATAACCCAGGCTGGCC  700

seq1  TTGAATTTACAGCAACCCTCCTTTGGTAACCTACCAACTGCTGTAGTTAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTACAGCAACCCTCCTTTGGTAACCTACCAACTGCTGTAGTTAC  750

seq1  CAGTGCATATTACCATGCCTCGTTTTATGCCTCACTGATCCCAGGACTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCATATTACCATGCCTCGTTTTATGCCTCACTGATCCCAGGACTTT  800

seq1  GGGCATGTTAGGCGAGTCCTTGAGCAACTGAGCTGTTCCCCCTCTTCCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGTTAGGCGAGTCCTTGAGCAACTGAGCTGTTCCCCCTCTTCCCA  850

seq1  G-TCCTGGCAGAGCCCACCAGT-ACCTGGCCTTTGAGGGCTTCAATCTCC  897
      | |||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  GTTCCTGGCAGAGCCCACCAGTAACCTGGCCTTTGAGGGC-TCAATCTCC  899

seq1  GCCTGCAGGCGGTTGATGTTGCGGTTCATCTCGGAGATC-TCTGTCTTTG  946
      ||||||| |||||||||||||||| |||||||||||||| ||||||||||
seq2  GCCTGCAAGCGGTTGATGTTGCGG-TCATCTCGGAGATCTTCTGTCTTTG  948

seq1  TGCGGCGCAGATCATCCCCGTGCTTCCCAGCCAGGGTCTGCA  988
      ||| ||||||||||| ||||||||| |||| |||||||||||
seq2  TGC-GCGCAGATCAT-CCCGTGCTT-CCAG-CAGGGTCTGCA  986