BAC Information

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BAC

Clone NameB6Ng01-034M11
Chromosome15 (Build37)
Map Location 13,252,373 - 13,356,652
singlet/doubletdoublet
Overlap geneLOC666686
Upstream geneGolph3, Pdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6, LOC100039907
Downstream geneLOC239338, LOC666708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034M11.bB6Ng01-034M11.g
ACCDH863432DH863433
length1071,060
definitionDH863432|Mus musculus domesticus DNA, BAC clone: B6Ng01-034M11, 5' end.DH863433|Mus musculus domesticus DNA, BAC clone: B6Ng01-034M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,252,373 - 13,252,480)(13,355,596 - 13,356,652)
sequence
gaattccaggaaagagatgcccagctctgaaattctcccaagatgattta
ggcataacaaaaatctaaccagtaaaataggctaatggagtggggtgggg
tgggggg
gaattccaatgtcttggctttaaataccaaggacacaagcctataggaat
aagatcataaagatgatgtcatgaaccaaaatgtagatgaataaggacaa
taaaccaaacatgaaaagattgtagagtggatttctctgaggcttaggtg
ctaagaagttctctgtaaatccttaggcctgagtaaatacttggtgagag
aaaagaataaggcaatagatgtccagagaggctccagaacagaagatgcc
ctgcttagattttcagatttaatcaagggacagctccccccccccactaa
gacattaaaatccattaagaatgtccagtgccagatgtattcatctaggt
gaatgttctataagcccgtatcatagagcaccctttcctctcctatgtgt
gctgagaaattaccaagatcctgaagtagatggggaagattagtaaacca
caagaatcccacatgctgacaactggcagccaacatagttgtactgacct
tcagacaggagcagctgagaggcagcagctacactcagacgctctagcga
agacttcatcctcagtagaggccagtagacatcaacgaccatcagaagcc
agaggcataagtcacatcccacttctcctaccaagaatttagagaggtct
ccaaaaggtaaatgccactaaaggaaataaggaggagtatgggagtaggg
taaatcctaaaacactgacatttaagctagatgtggctaagagtgtgatt
cagtagtagagcacttacctagcgtgtataagaccctgaactgatggctt
agcgctacaaagttcattagatgcaattctatgccttacaaatatctggg
acaaggttttctacaatcaagcagatctgaaagtaggattctaaataaaa
taagcataatatgtttttgcacaatcctggattgtgacttataaaataat
aaccatcataaattgtataattcatgcagatataatgccatccatatatt
ttatatggcatttacatacatatgtataagtcaagcagatttgaataaag
ggctaattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_13252373_13252480
seq2: B6Ng01-034M11.b_42_149

seq1  GGAATTCCAGGAAAGAGATGCCCAGCTCTGAAATGCTCCCAAGATGATTT  50
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGAATTCCAGGAAAGAGATGCCCAGCTCTGAAATTCTCCCAAGATGATTT  50

seq1  AGGCATAACAAAAATCTAACCAGTAAAATAGGCTAATGGAGTGGGGTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAACAAAAATCTAACCAGTAAAATAGGCTAATGGAGTGGGGTGGG  100

seq1  GTGGGGGG  108
      ||||||||
seq2  GTGGGGGG  108

seq1: chr15_13355596_13356652
seq2: B6Ng01-034M11.g_71_1130 (reverse)

seq1  TTAATTTAGCCCTTTAATCAAATACTGCTTGACTTATACATATGTATGTA  50
      |||| ||||||||||| |||||| ||||||||||||||||||||||||||
seq2  TTAA-TTAGCCCTTTATTCAAAT-CTGCTTGACTTATACATATGTATGTA  48

seq1  AATG-CATATAAAATATATGAAT-GCA-TATATCTGCATGAATTATAC-A  96
      |||| ||||||||||||||| || ||| |||||||||||||||||||| |
seq2  AATGCCATATAAAATATATGGATGGCATTATATCTGCATGAATTATACAA  98

seq1  TTTATGATGGTTATTAATTTTATATAGTCACAATCCA-GATTGTGCAAAA  145
      ||||||||||||||| |||||||| |||||||||||| ||||||||||||
seq2  TTTATGATGGTTATT-ATTTTATA-AGTCACAATCCAGGATTGTGCAAAA  146

seq1  ACATATTATGCTTA-TTTATTTAGAATCCTACTTTCAGATCTGCTTGATT  194
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACATATTATGCTTATTTTATTTAGAATCCTACTTTCAGATCTGCTTGATT  196

seq1  GTAG-AAACCTTGT-CCAGATATTTGTAAGGCATAGAATTGCATCTAATG  242
      |||| ||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTAGAAAACCTTGTCCCAGATATTTGTAAGGCATAGAATTGCATCTAATG  246

seq1  AACTTTGTAGCGCTAAGCCATCAGTTCAGGGTCTTATACACGCTAGGTAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTAGCGCTAAGCCATCAGTTCAGGGTCTTATACACGCTAGGTAA  296

seq1  GTGCTCTACTACTGAATCACACTCTTAGCCACATCTAGCTTTAAATGTCA  342
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTGCTCTACTACTGAATCACACTCTTAGCCACATCTAGC-TTAAATGTCA  345

seq1  GTGTTTTAGGATTTACCCTACTCCCATACTCCTCCTTATTTCCTTTAGTG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTAGGATTTACCCTACTCCCATACTCCTCCTTATTTCCTTTAGTG  395

seq1  GCATTTACCTTTTGGAGACCTCTCTAAATTCTTGGTAGGAGAAGTGGGAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTACCTTTTGGAGACCTCTCTAAATTCTTGGTAGGAGAAGTGGGAT  445

seq1  GTGACTTATGCCTCTGGCTTCTGATGGTCGTTGATGTCTACTGGCCTCTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTATGCCTCTGGCTTCTGATGGTCGTTGATGTCTACTGGCCTCTA  495

seq1  CTGAGGATGAAGTCTTCGCTAGAGCGTCTGAGTGTAGCTGCTGCCTCTCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGATGAAGTCTTCGCTAGAGCGTCTGAGTGTAGCTGCTGCCTCTCA  545

seq1  GCTGCTCCTGTCTGAAGGTCAGTACAACTATGTTGGCTGCCAGTTGTCAG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCCTGTCTGAAGGTCAGTACAACTATGTTGGCTGCCAGTTGTCAG  595

seq1  CATGTGGGATTCTTGTGGTTTACTAATCTTCCCCATCTACTTCAGGATCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGGATTCTTGTGGTTTACTAATCTTCCCCATCTACTTCAGGATCT  645

seq1  TGGTAATTTCTCAGCACACATAGGAGAGGAAAGGGTGCTCTATGATACGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATTTCTCAGCACACATAGGAGAGGAAAGGGTGCTCTATGATACGG  695

seq1  GCTTATAGAACATTCACCTAGATGAATACATCTGGCACTGGACATTCTTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATAGAACATTCACCTAGATGAATACATCTGGCACTGGACATTCTTA  745

seq1  ATGGATTTTAATGTCTTAGTGGGGGGGGGGAGCTGTCCCTTGATTAAATC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTTTAATGTCTTAGTGGGGGGGGGGAGCTGTCCCTTGATTAAATC  795

seq1  TGAAAATCTAAGCAGGGCATCTTCTGTTCTGGAGCCTCTCTGGACATCTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCTAAGCAGGGCATCTTCTGTTCTGGAGCCTCTCTGGACATCTA  845

seq1  TTGCCTTATTCTTTTCTCTCACCAAGTATTTACTCAGGCCTAAGGATTTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTATTCTTTTCTCTCACCAAGTATTTACTCAGGCCTAAGGATTTA  895

seq1  CAGAGAACTTCTTAGCACCTAAGCCTCAGAGAAATCCACTCTACAATCTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAACTTCTTAGCACCTAAGCCTCAGAGAAATCCACTCTACAATCTT  945

seq1  TTCATGTTTGGTTTATTGTCCTTATTCATCTACATTTTGGTTCATGACAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTTGGTTTATTGTCCTTATTCATCTACATTTTGGTTCATGACAT  995

seq1  CATCTTTATGATCTTATTCCTATAGGCTTGTGTCCTTGGTATTTAAAGCC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTATGATCTTATTCCTATAGGCTTGTGTCCTTGGTATTTAAAGCC  1045

seq1  AAGACATTGGAATTC  1057
      |||||||||||||||
seq2  AAGACATTGGAATTC  1060